Gene
| Gene Model ID | aug_v2a.04850 |
|---|---|
| Locus | scaf1787 : 107045 ... 111674 : + |
| To GenomeBrowser | scaf1787:107045..111674 |
| Genes list of scaffold | scaf1787 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| low quality protein: basement membrane-specific heparan sulfate proteoglycan core protein | GO:0005515 GO:0005604 GO:0044763 GO:0051216 GO:0060350 GO:0072358 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| aug_v2a.04850.t1 | gi|156382798|ref|XP_001632739.1| | predicted protein [Nematostella vectensis] | 8.0e-13 |
| aug_v2a.04850.t1 | gi|156321326|ref|XP_001618249.1| | hypothetical protein NEMVEDRAFT_v1g225345 [Nematostella vectensis] | 3.0e-10 |
| aug_v2a.04850.t1 | gi|260815108|ref|XP_002602316.1| | hypothetical protein BRAFLDRAFT_94330 [Branchiostoma floridae] | 2.0e-08 |
| aug_v2a.04850.t1 | gi|532018615|ref|XP_005353051.1| | PREDICTED: LOW QUALITY PROTEIN: basement membrane-specific heparan sulfate proteoglycan core protein [Microtus ochrogaster] | 5.0e-08 |
Transcript
| Transcript ID | aug_v2a.04850.t1 |
|---|---|
| Definition | - |
>aug_v2a.04850.t1 atcactacagcttcacgtggtgggaaaaagtgttggcgcagtttttagcatctaatctattttgaaaaccaccaggaaaa ttctaggtaagtactttttaaagggttctgttttgaagaaaatacgttagaacgtagaaaatgataagaagtacctactt cgccttgcgaagtagtacgtgtcacaatatgaggagcagtggcgaagtttttcacgaaatggaaacgacacaattttaaa tcacttagcatattttgagacttttttcagttataattcattgtttgaataacacgtttcactacaaatgcaatgagcat tgctttgagagctcaaatcaacaaggcatattgcacgattttcatttgaattggtgacacaaaatggtatgcggaacagg gaagaaacgaactttggaatagaaaagataattaaatcagtcagcgtgtcttgtgtcttgtacagtttttcgcttgcatc ttgccagcaatgtatcgagaaacaaaaggagcttttgtttcaagaaggaaaatagctgtgggtctgcgcaactttgcaag gccttatcatcggcaagactgaaaatcgtttactttacgtcgcacctttcagcttgatgaaaacagatctccaatttgat tgtcacaaaaaaagcaatgtaaataaattcatctccatttaaaaatgtatgcgtcgattcagcatatttgttactgcagc atctcaaagtacaagtggcgatctcgggtgttgcgtagggaaatttgttaaaaaaagattgcttctgtctttttcctaac tggccttactagaatgagccgcatcaacttaaacctctatgtttgtagcaaggaaaaataacgaaattttgaagatccac aaaactttcacttaaagcagtagtctctcaaaggaataatggaactgttccaaggttaaagtccaccaacaaatgcaaga gcagcaatgccttcaaaactcactagcgatttttgacagattctacagaaacgcacgagaaaaacatgatttctaactgc ttgatttgttacaaagaatcatatgaacacttcacattctaagagcccttgctatcaaacgcacagcgttttgacctctt taataaagcttccctgctggatttgacaagggaagcatttcttccaaaagcatagaattatcttgtgtgaacagtaggct ttggcttcggcgccttttcagacttacatggtgatgtaaattaaggatcctatcagtcgtctataaactccataacaaac atcagcaacatcgtaaaattaatacacatcaccgacaatgcatttatccaaaacagtgctcatcacttatcaactcggtt aaaactgctcctgtattttgcacacttgtcccaaacatattttagtagagatcaaaactgagttgcaggtacaccaaaag atatcaatcaaacattgagatgccactgtgctaagtaagatggaacggaatgatcataaaggtgtcctatttttttcctt tccgcagagccgaacgaccacatcccatagagaaaatgggcttcaatcaagaagccaaattcgtttggacttgctgcatc ttttttatcgctgtctctgcaggtcgtaagttttttttaaggtttcataaaagcaaacaactcttcagttgtatgtcagc gaatttgaccgcgtgccctacaatgtggaagagtctgctttcaagtaaaaggtttcattttaagggaagtgtgctacaag aattatcacctatattggtgctttcgatgataaactaaggaatgaatataaatgttgaccatccaattcatagtttggac gcttgcccattgagcttcagcaaggctctaggtggcactttcgcaggtgtattaattaacaataagactcaagttaaggg acttgaagttcgtgtttttccacgcgtcgaatcatcaaagaaaaaacaaaccaaacctaaaaaaatgtcaatgcatctct acattaatctaaaccaaaaataatttggaaaagaacaccaataccctcatgttcaagtttgtttatctctttcattattt tgtcggttttgttttttttagaggtgtggtgtcaaagcaaggaaagaattcaaatttgcgcttgtgtgttcacgttctct gtaaaacttgagaaattcttacttcatgttgcagatttgtcaagaacgggaaagaaatacatagaaattaaaaaaaaagc acgtgatgggcgagcaaagcttcatttttgttcattaaatatgcaaaatttgtgggcgttgtcgctgccgcggcgtctta aatcttaaactcccaattgaggatcctaaacaatcgagtggattttccggctgatttggttgttaaattaatcggaataa ccttgtttgnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcagaatacaagtacagtggcactaagttcaccaaggttccg cccaaaattatttttgctgaagtgggctctgacgtgaaattccactggaggttttcatttgctgctggttcgatgaatcg ttctcagtttgagtacattatttggggcatgtcagatggtgacaaattgcaagacaaatatatcacggtgttcgaagatg gaaagaggtttaaaaaaaacccggatcactctgagaaggaaagacagcggtggggagtctcaggaaatatcactgagaca gaaacaaatcaagtgtttgtactcaagaatgtcactaaatccgacaccgaaaaaacgtattgctgcaaagctatcgtttg gggcgaatggtttgtgagtggtccgattcacctcgaacttaaaggtaagattcattcattcggttggtcaatgttattac ttaattagttatctgtgacatatttgagtttccatcacttcgtggttcatacggaaatccatctccttaccaggaaatga aattagaattgaatctacataccatgatcagagacactccttattggttgatccccgagtacaattcaacggnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttaatattattgtctgatatggcatgccaatattggaataaca ctgtatcccaactatggaatctttaaagaagaaaaaaacgaattgttctgatatcagattggtcgatcttggaattcata gttatcatgttgaaatgcatttccctttttatcatagacacgccaaaacctgtcacccctgctccggaaggtaggaagtc attagctatccactaaagacgggaatgaacaaatgggttgattatgataccggcctattcagtcggtatttgacttttaa atagaggtgggcgatcatttcggcgtgaatgggccctttgcagttgagcgatcacagctgcgaaaaaaattcaaatttgg tggctttgtttaacatgcccaagtgtgtcatttgctctcacgtttggcgattttgtaccacgtaatcgctctgctgcaaa ggggccattgagcaattattaaacatagacgcatttatacagttttgacacctgttttaagatattaagaggaaataata ccagggttcaacaaaaatggcattctcagctgttacaaatttaaagctgttacagatacagggtacgacgtcgatttgtc tacaatgctattgatttaaggcggtctcccatttgaccactgtggtgaaaagtaaaagatgctagttcccaactataaca aagttgataaataaagtgagttagctctctttcttcgtagttccagcaagtattactatccgaacaaatgaacggaatgt caaagttgatgaacgcgtggaattgcaatgcgatgcctctggggaaccagcaccttttgtcgaatggtccaaagaaggag tgctaaagcaaaatagcacagaaaaaacgtcactcgtgattccgaaagtttcgcgtttgcatgcaggtacctatgtttgc aaagccacaaacacgggtggatctgtgaagtactctgttacactttgggttggaagctaaatcacctcatttaatcaaat gcgagtgcgatgcggtgcgaaagagggctcaacaaacggactgccacgtgagcaacagaaacgcttgaataaaactcgat gctttaatttaaagtcatgtcatattctaggtgaatagctgtttttatctaagcgagatattatttcagcatttgaaaag aaacatgtcgattatcggcaattttcttatttaaaattcatgggtgccgctattttgaatttgatggtacagtcatctat tgtttcatcttaataaggaaaaatagtgaggtctaacattattgagttgttatccaaatgaaatacctttataattaaac caatgagtcacgaccaacaaagctgtgccttgtgcggccagccgccaactcagttcatattagttaattgattatttctt aagaatttttacgcgtgccgaacgcttatgtacttcaatttcaattcaattgtaacgggctacgtaacccaactttgaag ttaattgttaagagccgaatttctttattatcccgtgctactactgtgcaataaaattgcttcaattgtc |
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Protein
| Protein ID | aug_v2a.04850.t1 |
|---|---|
| Definition | - |
>aug_v2a.04850.t1 MGFNQEAKFVWTCCIFFIAVSAGQYKYSGTKFTKVPPKIIFAEVGSDVKFHWRFSFAAGSMNRSQFEYIIWGMSDGDKLQ DKYITVFEDGKRFKKNPDHSEKERQRWGVSGNITETETNQVFVLKNVTKSDTEKTYCCKAIVWGEWFVSGPIHLELKDTP KPVTPAPEVPASITIRTNERNVKVDERVELQCDASGEPAPFVEWSKEGVLKQNSTEKTSLVIPKVSRLHAGTYVCKATNT GGSVKYSVTLWVGS* |
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