publication
For those who utilize our genome and transcriptome data, please cite:
Shinzato, C., Shoguchi, E., Kawashima, T., Hamada, M., Hisata, K., Tanaka, M., Fujie, M., Fujiwara, M., Koyanagi, R., Ikuta, T., Fujiyama, A., Miller, D. J., and Satoh, N.
Using the Acropora digitifera genome to understand coral responses to environmental change.
Nature, 476(7360):320-323. (2011)
Using the Acropora digitifera genome to understand coral responses to environmental change.
Nature, 476(7360):320-323. (2011)
Assembled Transcriptome v1.0 (July 2011)
| adi_transcriptome_assembly.v1.fa.gz | Assembled Transcriptome v1.0, (compressed with gzip), total 36,780 contigs for 29,364,984 bp |
Assembly v0.9 (November 2010)
| adi_v0.9.scaffold.fa.gz | Genome Assembly ver 0.9, (compressed with gzip), total 18,834 scaffolds for 412,157,434 bp (with GAP sequences) |
| aug_repeatmask_pasa_input.gff3.gz | Predicted Genes for Genome Assembly ver 0.9, (compressed with gzip) |
| adi_aug101220_pasa_gene.fa.gz | Predicted Trascripts for Genome Assembly ver 0.9, (compressed with gzip), 32,985 transcript models |
| adi_aug101220_pasa_prot.fa.gz | Predicted Proteins for Genome Assembly ver 0.9, (compressed with gzip), 33,366 protein models |
Assembly v1.0 (July 2011)
| adi_v1.0.scaffold.fa.gz | Genome Assembly ver 1.0, (compressed with gzip), total 4,765 scaffolds for 419,317,571 bp (with GAP sequences). No gene_models. |
Raw Data
| DDBJ Read Archive DRA000447 | |
| NCBI Read Archive DRP000456 |