Gene
| Gene Model ID | pfu_aug2.0_99.1_30209 |
|---|---|
| Locus | scaffold99.1 : 371866 ... 389847 : + |
| To GenomeBrowser | scaffold99.1:371866..389847 |
| Genes list of scaffold | scaffold99.1 |
| Synonym | pfu_aug1.0_363.1_29206 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_99.1_30209.t1 | 3 | 1 | BRF1 | 61 | 71 | 1.8e-07 | 31.3 | 0.3 | 4500.0 | -2.1 |
| pfu_aug2.0_99.1_30209.t1 | 3 | 2 | BRF1 | 203 | 258 | 1.8e-07 | 31.3 | 1.2e-11 | 1.8e-07 | 31.3 |
| pfu_aug2.0_99.1_30209.t1 | 3 | 3 | BRF1 | 325 | 345 | 1.8e-07 | 31.3 | 0.78 | 12000.0 | -3.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_99.1_30209.t1 | gi|676482014|ref|XP_009062561.1| | hypothetical protein LOTGIDRAFT_166871, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_99.1_30209.t1 | gi|556946843|ref|XP_005986556.1| | PREDICTED: transcription factor IIIB 90 kDa subunit [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_99.1_30209.t1 | gi|162287069|ref|NP_001088063.1| | BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit [Xenopus laevis] | 8.40779e-45 |
| pfu_aug2.0_99.1_30209.t1 | gi|698403302|ref|XP_009809365.1| | PREDICTED: transcription factor IIIB 90 kDa subunit-like, partial [Gavia stellata] | 9.80909e-45 |
| pfu_aug2.0_99.1_30209.t1 | gi|733890757|ref|XP_010710306.1| | PREDICTED: transcription factor IIIB 90 kDa subunit isoform X1 [Meleagris gallopavo] | 9.80909e-45 |
Transcript
| Transcript ID | pfu_aug2.0_99.1_30209.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_99.1_30209.t1 atgcatgattttgcccgatctgtgaacgaccttgtacgtgtggtgaaagtctgtgatacaacaatcagaaaaagattgtc agaattttctttgacggcttccagtcagctaaccatagaagaattccagaaaatcgacttggaggaagaagcagacccac catcatttactgcttcaaaactaaaagcccagaaggctaaattagcccagctggaagaacaaaataaactaccagacctg gagaatgccgtcaccgagctacagagagagattgaggatggattagaaccagccaaacccagagggccctatgctgggta tgctagagtggatgagcccaaggaatcatcatatagagtaaatgaagctgggaaggaggaagagaacgttacaaaattta tagaggaggagaccttaacaccttacatggaagaagggggcgcagaggtcgtggatcgagaaaaaatgcgggagaaactg atcaaacctgtacatgtggcgttaggcattaatacgttagctagagaagtcattaaggaagatacgaaggaaaaagaatc ggagccagagaatgaagatggagaaatagatctcaccgggatagatgatgatgaactagaaaagcaataccttttgactg atgacgaaataatagccaaaaccaagttgtggatgaacgccaatgccgaataccttcaagaacaaaaagagaaggaagag agattagccagggaaagggaagaggaagctaaaaacccagaaaaatttaagcatgaaatagaaaatcgtttgagatccta catgtatgacaggctcaggaaatccagtgtaacaatagatctgacagaaaatgaagagaaaccagatgtaaagaaaatca aactagagcaaccagagcaggctgtagtggtagaaagtggccctgtacagtatgtgcatgaaactaaagaagaaatagag gaagaagatgatatatcagatgatgaggagcaacatgtcagtgctgcgcagctgtttggtaataatgcagactatgaaga gcatgattatgatgatgactga |
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Protein
| Protein ID | pfu_aug2.0_99.1_30209.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_99.1_30209.t1 MHDFARSVNDLVRVVKVCDTTIRKRLSEFSLTASSQLTIEEFQKIDLEEEADPPSFTASKLKAQKAKLAQLEEQNKLPDL ENAVTELQREIEDGLEPAKPRGPYAGYARVDEPKESSYRVNEAGKEEENVTKFIEEETLTPYMEEGGAEVVDREKMREKL IKPVHVALGINTLAREVIKEDTKEKESEPENEDGEIDLTGIDDDELEKQYLLTDDEIIAKTKLWMNANAEYLQEQKEKEE RLAREREEEAKNPEKFKHEIENRLRSYMYDRLRKSSVTIDLTENEEKPDVKKIKLEQPEQAVVVESGPVQYVHETKEEIE EEDDISDDEEQHVSAAQLFGNNADYEEHDYDDD |
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