Gene
| Gene Model ID | pfu_aug2.0_99.1_30207 |
|---|---|
| Locus | scaffold99.1 : 358276 ... 363791 : + |
| To GenomeBrowser | scaffold99.1:358276..363791 |
| Genes list of scaffold | scaffold99.1 |
| Synonym | pfu_aug1.0_363.1_29204 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_99.1_30207.t1 | 1 | 1 | TF_Zn_Ribbon | 6 | 46 | 4.8e-12 | 44.9 | 3.8e-15 | 9.4e-12 | 44.0 |
| pfu_aug2.0_99.1_30207.t1 | 1 | 1 | TFIIB | 93 | 163 | 2.1e-15 | 56.2 | 1.2e-18 | 3.0e-15 | 55.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_99.1_30207.t1 | gi|585687825|ref|XP_006820568.1| | PREDICTED: transcription factor IIIB 90 kDa subunit-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_99.1_30207.t1 | gi|551507424|ref|XP_005805242.1| | PREDICTED: transcription factor IIIB 90 kDa subunit-like [Xiphophorus maculatus] | 0.0 |
| pfu_aug2.0_99.1_30207.t1 | gi|655900275|ref|XP_008251482.1| | PREDICTED: transcription factor IIIB 90 kDa subunit [Oryctolagus cuniculus] | 0.0 |
| pfu_aug2.0_99.1_30207.t1 | gi|658910226|ref|XP_008395198.1| | PREDICTED: transcription factor IIIB 90 kDa subunit-like [Poecilia reticulata] | 0.0 |
| pfu_aug2.0_99.1_30207.t1 | gi|573888983|ref|XP_006632258.1| | PREDICTED: transcription factor IIIB 90 kDa subunit-like [Lepisosteus oculatus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_99.1_30207.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_99.1_30207.t1 atgtccagtaaagctgtctgtaaccagtgcggctgcaccgacattgacacagatccagcccgaggggatgccgtatgtac aaactgtggttcggtacttgaggaccagatcatcgtatcagaaatccagtttgaggagcacgctacgggagcctcctctg tcattggtcaatttgtctccagtgatggaaccaaatcacattctcttgggataagtttccctcatggcatgaagaaggaa tcaagaacagtaactcttgacaatgggaagaaaagaattcagcaccttggaagccagcttaaattaaaccaacattgtat ggacaccgcattcaacttcttcaagatggcggtgatgaagaacttaacacgaggaaggaaaactcatcacgtaacggcag cgtgtctatatatagtatgtaggactgaggggactccacattttctacttgacttcagtgatgcactccagattaatgta tacactcttggcaagacctacttgacgttgtccagagcactgtgtatcaatattccagcaatagaaccaatcaatgaaac tgcatgtattaagcagcaattgaatgtgttttaa |
|
Protein
| Protein ID | pfu_aug2.0_99.1_30207.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_99.1_30207.t1 MSSKAVCNQCGCTDIDTDPARGDAVCTNCGSVLEDQIIVSEIQFEEHATGASSVIGQFVSSDGTKSHSLGISFPHGMKKE SRTVTLDNGKKRIQHLGSQLKLNQHCMDTAFNFFKMAVMKNLTRGRKTHHVTAACLYIVCRTEGTPHFLLDFSDALQINV YTLGKTYLTLSRALCINIPAIEPINETACIKQQLNVF |
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