Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_99.1_30203
Locus scaffold99.1 : 274105 ... 320864 : +
To GenomeBrowser scaffold99.1:274105..320864
Genes list of scaffold scaffold99.1
Synonym pfu_aug1.0_34715.1_26691

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_99.1_30203.t1 2 1 MMPL 653 772 5.2e-06 25.3 0.18 670.0 -1.3
pfu_aug2.0_99.1_30203.t1 2 2 MMPL 1092 1258 5.2e-06 25.3 1.4e-09 5.2e-06 25.3

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_99.1_30203.t1 gi|676491880|ref|XP_009065738.1| hypothetical protein LOTGIDRAFT_51941, partial [Lottia gigantea] 0.0
pfu_aug2.0_99.1_30203.t1 gi|524880741|ref|XP_005097030.1| PREDICTED: protein dispatched homolog 1-like [Aplysia californica] 0.0
pfu_aug2.0_99.1_30203.t1 gi|723152001|ref|XP_010293515.1| PREDICTED: protein dispatched homolog 1 [Phaethon lepturus] 0.0
pfu_aug2.0_99.1_30203.t1 gi|584083185|ref|XP_006761392.1| PREDICTED: protein dispatched homolog 1-like, partial [Myotis davidii] 0.0
pfu_aug2.0_99.1_30203.t1 gi|554543937|ref|XP_005866569.1| PREDICTED: protein dispatched homolog 1 [Myotis brandtii] 0.0

Transcript
Transcript IDpfu_aug2.0_99.1_30203.t1
Definition-
>pfu_aug2.0_99.1_30203.t1
atggcgagcggtgaccatatcaagtcaaaatatttctccgcggggaagaaaactttaaatgtccagcagatacgtccgtc
cactcgatcacaatgcgagactcctcataatacgagtgttgattctaatgcggacgaaaataacacaattctgagaaaac
tggaacaaattgaagcagctattaaaaacactgtgaagacagaagaaataagtgaactaaaggaagctattaaaggaaca
gttaaaactgaagatttaaagggaatagtttcaacaatggtgaaagacattatgaaggaacaaagggaagaattcgaaca
gagaatagagaaagcggctgaaaagtctagacgagaacgaagtaaactgaaaggagaaattgacgacctgcgtgttgaaa
ataacaatttaaaagaaatgatagcagccaagaggtccgagatgcaagatctacgttgtgcggcaaatacggctatagat
acagcgtttgaagcccgtaggtgtgcaaactacaatgaacaatattcacgtaagaataacgtgaaaatatacggcgtgca
tgaatcagaaggggagaacactggagaagaagtgatgaaactattgaaagacaaggctgaaacgaccgttcacccagacg
agattattgctgttcataggattccgggatccgcgcgagatgatcgtccgagacctattattgtaaaattaaagaactcg
gaagtgaaaagtcgagtgatcaggcagagagcgactattaagaaagccaaaataggaatacgattagccgatgacgttac
tcgggaaaataccaaactcatggaaagactgaatgaacacgaaatgatcgaatcatgctggtttttcaacgggagcgttt
tcgggaaaatacacggctcaggaaggaaggtaaaattcgatatcgatgatgacattgccgaaaaagtgagaaaacccaaa
aagaactatgctcgattcttggcacagtacccctatgctgttctaattgcctcctctgtagtggcgggaatctgtctcgt
gctgtccttgaccttggtggaccttccagacttcagtgatcctatggcaggattcgagccaagaggtacagaaatcagca
agcgaatgatgacgtatcagaacttagtggaaaacaaagggagcaaactctcactacgtccattaccagacgacatcaaa
gagctgctagagttggatcgggacaccaaaattaagtacaagagcaccaaaaatgcaacggaaattgacgatgaatctgg
agtgatcaggcgcagtgccgatccagaatttccattttgccatatagaagatggtcagtataacaacttggccaggatag
tgtaccagagctcggatggttccaatctcttcactgctgacaaactccaccagatgtgtaatacggaatctaccagcatt
caagctcaccatacattccccggtatctgccaagtcaaggagagcggccactgctgtccgagctggtctctggcaaacta
cgtggccttcctctccggcaaacctagctgccaaaatataacagacgacgacgtcatggcggtgtctagactcttacaaa
gctgtgccggtcactactctaaccgttcactcacttccaactgtgataactcattccaacacacgtcctcattctcgcga
tccaggtcatgtaaaggtgtaccaaaatcctgcactcgttttaatatcgtctacaacatactgcatcatatcactgatat
taatttcgttcatccaaccaggaattccggtaaacccttcctgacgtacgccgtcacctttttacccgtagccgggagta
tcagtaccgtagagctctacgagcatttggaaaacgtagcagacgagatgtcaggtgacgtcagaatcgctggcgcgcat
ttcggaatcaagtacacgctttttggagagtacttaaggagtgatacattgtttctcggtatagcagcttttattatatt
tattgtggtttggctgtacaccacttcgctttttatcaccataatgacgttcatcatgatgttttggtctttagaaatgg
cgtactttgtttatacaatgatcctagaactggtgttctttccttacatgaaccttgtagccgttatcattatcatcgcc
atcggagcagacgatgtttttctctacagtaaagtgtggcactcggcgaaatcttcacgaaacaatggcacactggaaaa
gattgtttacgacaccatcaagcacgccactctgtcgattatatattcggcgctggtcgttttgtgcaatttcttactcg
ttctgacatggcttccggcttccatcgtaatttatgacaaatggtgcaattgcgaaatgtggtacaaccccgagttctca
acccacagaaattgttgttattacgtgtgtaaaattccattcaaagcttacgaaaaattgagtgatacattacggatatt
ttgtgaaaagatactcccatttttagtagtgaaattccggtttgtatggatagtcatatttggatgtttaggactaggag
gagtgattgtgatatttttctaccccaaagtgaaacttccctcatccgaaaattttcaggtattttcatcgagtcatcta
ctagaacgatatgatttcatgctcaataaacaattttggttcgagaaggtgcataagaaacacgcctttctccccctcac
gttcgtctggggagtttaccccacggacgacggctcacacctagacccggccgactcggggaacctcgtctttgataaag
tcttcgatgcaacatctagtgaagctcaaatctggttgctcaaattttgtcagcatatacgcaagtctgatttttatcgt
cgcatacccggcctacagatcacgaactgcttctttgacaatttccacaacaattacatgtcccgaccttgctgggatgg
gatagaggaccatcgaccgtgttgtaacaagactgattacaaacttgacagcgtgacggtctttgaatgtttgatgcgat
acattccactactagagaagacaaacggggtctcctattcccactatagccccggtcccagattccatcaaggtcgcctc
agtgccttcctcgttcaatttcttagcaacactcaattttctacttcatacgatgaaatcaaaacttttcatacgacagt
ggagcgcttccttaaggacgaattgacgacggctccaaaatcattaaaaaacggctggttcgttagcgacttgggatttt
atgatctacagcacagcttagcaacggaaactcctatagctatcggggtttccctggctgtggttgccttggtaacgttt
ataacgactctgaatattttgatcagcttactgtccattattagtatagcttgtgttatgtttgtaaccatttctattat
ggtgctcatgaactgggagctcaatatattagaatccgttgttgttacagttgcgataggtttgtccgtggattacactc
tacattatggggtgtcgtatagactcctaccggacctccagcgtgacgcgcgggtcgccacgtccacggcgggcatcagt
ggggttatttcctcggcagctcttaccacattccttgcaggggcaatgatgatgccttccacagtgttagtgtatcagaa
atttggtatttttctaatgattatcatctccattagttgggcatattccacattctttttccaatcgttactgtgttgta
taggacctaagggtagcttcggtcagtaccactggccgtcgtgcgactgctgctcaaattccgctcattcgcatgtggac
aagactgtgtattctatgtccgagtccaccgtatcaactgctagtacctatccacacactagcagcacggtaagtgacgt
cagagagttcgaatcggtgtctgaaagcttgactgtgactccgcatccaactccacatcatcatcctcgtaggtcaaagt
tcaggggtcattacatgaaagcgcgcacgcgcagtgacagtcctgaattagatccgcattgtcgtagagaaagtcacgtg
cgtttttctgtgagtagcatagaacaacatatagacccggatgatgatcatactccatatcattcgaaacgaaggtcaag
gacagattccgttttcgaagaaccggaaccggaagttggtagcagacgagcgagcgaagcgactgcgaaaagtgaaatca
cacagtcttccacattaagctcaaaaatctattcaactagatttgtgatttttcgtgacgggaaaaggggttaa

Protein
Protein IDpfu_aug2.0_99.1_30203.t1
Definition-
>pfu_aug2.0_99.1_30203.t1
MASGDHIKSKYFSAGKKTLNVQQIRPSTRSQCETPHNTSVDSNADENNTILRKLEQIEAAIKNTVKTEEISELKEAIKGT
VKTEDLKGIVSTMVKDIMKEQREEFEQRIEKAAEKSRRERSKLKGEIDDLRVENNNLKEMIAAKRSEMQDLRCAANTAID
TAFEARRCANYNEQYSRKNNVKIYGVHESEGENTGEEVMKLLKDKAETTVHPDEIIAVHRIPGSARDDRPRPIIVKLKNS
EVKSRVIRQRATIKKAKIGIRLADDVTRENTKLMERLNEHEMIESCWFFNGSVFGKIHGSGRKVKFDIDDDIAEKVRKPK
KNYARFLAQYPYAVLIASSVVAGICLVLSLTLVDLPDFSDPMAGFEPRGTEISKRMMTYQNLVENKGSKLSLRPLPDDIK
ELLELDRDTKIKYKSTKNATEIDDESGVIRRSADPEFPFCHIEDGQYNNLARIVYQSSDGSNLFTADKLHQMCNTESTSI
QAHHTFPGICQVKESGHCCPSWSLANYVAFLSGKPSCQNITDDDVMAVSRLLQSCAGHYSNRSLTSNCDNSFQHTSSFSR
SRSCKGVPKSCTRFNIVYNILHHITDINFVHPTRNSGKPFLTYAVTFLPVAGSISTVELYEHLENVADEMSGDVRIAGAH
FGIKYTLFGEYLRSDTLFLGIAAFIIFIVVWLYTTSLFITIMTFIMMFWSLEMAYFVYTMILELVFFPYMNLVAVIIIIA
IGADDVFLYSKVWHSAKSSRNNGTLEKIVYDTIKHATLSIIYSALVVLCNFLLVLTWLPASIVIYDKWCNCEMWYNPEFS
THRNCCYYVCKIPFKAYEKLSDTLRIFCEKILPFLVVKFRFVWIVIFGCLGLGGVIVIFFYPKVKLPSSENFQVFSSSHL
LERYDFMLNKQFWFEKVHKKHAFLPLTFVWGVYPTDDGSHLDPADSGNLVFDKVFDATSSEAQIWLLKFCQHIRKSDFYR
RIPGLQITNCFFDNFHNNYMSRPCWDGIEDHRPCCNKTDYKLDSVTVFECLMRYIPLLEKTNGVSYSHYSPGPRFHQGRL
SAFLVQFLSNTQFSTSYDEIKTFHTTVERFLKDELTTAPKSLKNGWFVSDLGFYDLQHSLATETPIAIGVSLAVVALVTF
ITTLNILISLLSIISIACVMFVTISIMVLMNWELNILESVVVTVAIGLSVDYTLHYGVSYRLLPDLQRDARVATSTAGIS
GVISSAALTTFLAGAMMMPSTVLVYQKFGIFLMIIISISWAYSTFFFQSLLCCIGPKGSFGQYHWPSCDCCSNSAHSHVD
KTVYSMSESTVSTASTYPHTSSTVSDVREFESVSESLTVTPHPTPHHHPRRSKFRGHYMKARTRSDSPELDPHCRRESHV
RFSVSSIEQHIDPDDDHTPYHSKRRSRTDSVFEEPEPEVGSRRASEATAKSEITQSSTLSSKIYSTRFVIFRDGKRG

  • MGU Home
  • Genome Projects
  • Information
  • Genome Browser
  • Blast Search
  • Keyword Search
  • Downloads

Gene ID:



Keyword:



  • Login

copyright © Marine Genomics Unit 2015
Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495