Gene
Gene Model ID | pfu_aug2.0_99.1_30194 |
---|---|
Locus | scaffold99.1 : 29446 ... 30823 : + |
To GenomeBrowser | scaffold99.1:29446..30823 |
Genes list of scaffold | scaffold99.1 |
Synonym | pfu_aug1.0_10407.1_17623 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_99.1_30194.t1 | 1 | 1 | Neur_chan_LBD | 34 | 228 | 7.0e-39 | 133.2 | 1.3004e-42 | 9.7e-39 | 132.7 |
pfu_aug2.0_99.1_30194.t1 | 2 | 1 | Neur_chan_memb | 236 | 321 | 2.9e-12 | 46.9 | 3.9e-16 | 2.9e-12 | 46.9 |
pfu_aug2.0_99.1_30194.t1 | 2 | 2 | Neur_chan_memb | 383 | 411 | 2.9e-12 | 46.9 | 0.012 | 92.0 | 2.7 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_99.1_30194.t1 | gi|617601047|ref|XP_007522809.1| | PREDICTED: neuronal acetylcholine receptor subunit alpha-6, partial [Erinaceus europaeus] | 0.0 |
Transcript
Transcript ID | pfu_aug2.0_99.1_30194.t1 |
---|---|
Definition | - |
>pfu_aug2.0_99.1_30194.t1 atgaagagattgtgtgtcgttgtcctattcctttcctgtctaaaggtgaccctttctcagaccaatagcgattacgaggg tattatgacggagattttcacaaccaacggctataacaagaaaattttaccgaaagcaactcctaacaatccagttgaga ttgacctaagctttgtgcttcttggcatcaatgaaatagatgaattagcagagaaaatgaccacgactgcatatattgtg atatcctggaccgaccctggattagaatgggatcctgctgctcatggtgacaccgacaacatatatgtcccacaggacga tatttggaaaccggatattttcttgcagaatggattcactaaatttaaagaacttggtggatctttctattatattccgg ttgaattcgaaggaagaccaacatggatgccctttgaagtgtttgagagtaggtgttcccttgatacgagttattatccc tttgatgaacaaaggtgctccatcgcttttgtcgtatggagtcactccgtggaagaggttgaaataacgaaaagtaccta tggaataaggtatagtccagaattcaaagcaaacagcgtatgggacatcctatcagtatctagtgctatcagcagagaaa ctagagcgtcgaaattaacattcacgtttcttctgaagcgtaagtctctctactatgtggttaacatcatacttcccgtg gtatttttgggcctcctgaatgggctcgtgtttatcattccagcggattcaggcgaaaagacaggatactcagtcacagt tttcctgtcccttgttgtatttttgacaatcataagtacaattctaccggttaactcagagacggtttccttgttcggta tctttctgttcctccaagtcattattggagtgatggtacttatcgttacgaccatgcaattacgcctaaatgcaagatct accttgcatcaagttgatggcattttcctgaaagtagcaaaactaggaaagaatacctgctgttgtcagcgaaggaagaa tagaaggattagtccaagcaataaaatacatatcgttgagtgtgagttggggaatgatgagaaggaatcacctcgtactg actacacgccggcagatgatgcttacttgtggcgtgatgtagtcacaggaatcgatgtcataggattctggtgttttgtt attgcttactctgttgtgacggcttcaatgttctcttttctcgtaacatag |
Protein
Protein ID | pfu_aug2.0_99.1_30194.t1 |
---|---|
Definition | - |
>pfu_aug2.0_99.1_30194.t1 MKRLCVVVLFLSCLKVTLSQTNSDYEGIMTEIFTTNGYNKKILPKATPNNPVEIDLSFVLLGINEIDELAEKMTTTAYIV ISWTDPGLEWDPAAHGDTDNIYVPQDDIWKPDIFLQNGFTKFKELGGSFYYIPVEFEGRPTWMPFEVFESRCSLDTSYYP FDEQRCSIAFVVWSHSVEEVEITKSTYGIRYSPEFKANSVWDILSVSSAISRETRASKLTFTFLLKRKSLYYVVNIILPV VFLGLLNGLVFIIPADSGEKTGYSVTVFLSLVVFLTIISTILPVNSETVSLFGIFLFLQVIIGVMVLIVTTMQLRLNARS TLHQVDGIFLKVAKLGKNTCCCQRRKNRRISPSNKIHIVECELGNDEKESPRTDYTPADDAYLWRDVVTGIDVIGFWCFV IAYSVVTASMFSFLVT |