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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_99.1_30194
Locus scaffold99.1 : 29446 ... 30823 : +
To GenomeBrowser scaffold99.1:29446..30823
Genes list of scaffold scaffold99.1
Synonym pfu_aug1.0_10407.1_17623

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_99.1_30194.t1 1 1 Neur_chan_LBD 34 228 7.0e-39 133.2 1.3004e-42 9.7e-39 132.7
pfu_aug2.0_99.1_30194.t1 2 1 Neur_chan_memb 236 321 2.9e-12 46.9 3.9e-16 2.9e-12 46.9
pfu_aug2.0_99.1_30194.t1 2 2 Neur_chan_memb 383 411 2.9e-12 46.9 0.012 92.0 2.7

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_99.1_30194.t1 gi|617601047|ref|XP_007522809.1| PREDICTED: neuronal acetylcholine receptor subunit alpha-6, partial [Erinaceus europaeus] 0.0

Transcript
Transcript IDpfu_aug2.0_99.1_30194.t1
Definition-
>pfu_aug2.0_99.1_30194.t1
atgaagagattgtgtgtcgttgtcctattcctttcctgtctaaaggtgaccctttctcagaccaatagcgattacgaggg
tattatgacggagattttcacaaccaacggctataacaagaaaattttaccgaaagcaactcctaacaatccagttgaga
ttgacctaagctttgtgcttcttggcatcaatgaaatagatgaattagcagagaaaatgaccacgactgcatatattgtg
atatcctggaccgaccctggattagaatgggatcctgctgctcatggtgacaccgacaacatatatgtcccacaggacga
tatttggaaaccggatattttcttgcagaatggattcactaaatttaaagaacttggtggatctttctattatattccgg
ttgaattcgaaggaagaccaacatggatgccctttgaagtgtttgagagtaggtgttcccttgatacgagttattatccc
tttgatgaacaaaggtgctccatcgcttttgtcgtatggagtcactccgtggaagaggttgaaataacgaaaagtaccta
tggaataaggtatagtccagaattcaaagcaaacagcgtatgggacatcctatcagtatctagtgctatcagcagagaaa
ctagagcgtcgaaattaacattcacgtttcttctgaagcgtaagtctctctactatgtggttaacatcatacttcccgtg
gtatttttgggcctcctgaatgggctcgtgtttatcattccagcggattcaggcgaaaagacaggatactcagtcacagt
tttcctgtcccttgttgtatttttgacaatcataagtacaattctaccggttaactcagagacggtttccttgttcggta
tctttctgttcctccaagtcattattggagtgatggtacttatcgttacgaccatgcaattacgcctaaatgcaagatct
accttgcatcaagttgatggcattttcctgaaagtagcaaaactaggaaagaatacctgctgttgtcagcgaaggaagaa
tagaaggattagtccaagcaataaaatacatatcgttgagtgtgagttggggaatgatgagaaggaatcacctcgtactg
actacacgccggcagatgatgcttacttgtggcgtgatgtagtcacaggaatcgatgtcataggattctggtgttttgtt
attgcttactctgttgtgacggcttcaatgttctcttttctcgtaacatag

Protein
Protein IDpfu_aug2.0_99.1_30194.t1
Definition-
>pfu_aug2.0_99.1_30194.t1
MKRLCVVVLFLSCLKVTLSQTNSDYEGIMTEIFTTNGYNKKILPKATPNNPVEIDLSFVLLGINEIDELAEKMTTTAYIV
ISWTDPGLEWDPAAHGDTDNIYVPQDDIWKPDIFLQNGFTKFKELGGSFYYIPVEFEGRPTWMPFEVFESRCSLDTSYYP
FDEQRCSIAFVVWSHSVEEVEITKSTYGIRYSPEFKANSVWDILSVSSAISRETRASKLTFTFLLKRKSLYYVVNIILPV
VFLGLLNGLVFIIPADSGEKTGYSVTVFLSLVVFLTIISTILPVNSETVSLFGIFLFLQVIIGVMVLIVTTMQLRLNARS
TLHQVDGIFLKVAKLGKNTCCCQRRKNRRISPSNKIHIVECELGNDEKESPRTDYTPADDAYLWRDVVTGIDVIGFWCFV
IAYSVVTASMFSFLVT

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