Gene
| Gene Model ID | pfu_aug2.0_97.1_23442 |
|---|---|
| Locus | scaffold97.1 : 260268 ... 279284 : - |
| To GenomeBrowser | scaffold97.1:260268..279284 |
| Genes list of scaffold | scaffold97.1 |
| Synonym | pfu_aug1.0_26808.1_62447 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_97.1_23442.t1 | 4 | 1 | RabGAP-TBC | 423 | 450 | 3.7e-33 | 114.8 | 0.17 | 1300.0 | -1.4 |
| pfu_aug2.0_97.1_23442.t1 | 4 | 2 | RabGAP-TBC | 477 | 506 | 3.7e-33 | 114.8 | 0.52 | 3800.0 | -2.9 |
| pfu_aug2.0_97.1_23442.t1 | 4 | 3 | RabGAP-TBC | 680 | 708 | 3.7e-33 | 114.8 | 0.61 | 4500.0 | -3.2 |
| pfu_aug2.0_97.1_23442.t1 | 4 | 4 | RabGAP-TBC | 757 | 899 | 3.7e-33 | 114.8 | 4.9e-37 | 3.7e-33 | 114.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_97.1_23442.t1 | gi|676464708|ref|XP_009057007.1| | hypothetical protein LOTGIDRAFT_120741, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_97.1_23442.t1 | gi|611964213|ref|XP_007478083.1| | PREDICTED: TBC1 domain family member 2B isoform X2 [Monodelphis domestica] | 0.0 |
| pfu_aug2.0_97.1_23442.t1 | gi|611964211|ref|XP_007478082.1| | PREDICTED: TBC1 domain family member 2B isoform X1 [Monodelphis domestica] | 0.0 |
| pfu_aug2.0_97.1_23442.t1 | gi|658855655|ref|XP_008410471.1| | PREDICTED: TBC1 domain family member 2B [Poecilia reticulata] | 0.0 |
| pfu_aug2.0_97.1_23442.t1 | gi|410908259|ref|XP_003967608.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_97.1_23442.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_97.1_23442.t1 atggcggaggtgggaggaggtgaagtgaaagtagaaagatcttcgagctctcagtgtttaattgacttgtcacctacttc tcccaggttatcaggagattccgctatatctaatggatcgaaaacagacgatgataattcagagtttccgtcaaaacagc cgttgtctcaaaatgaagaacttcctgatagacatgttgttcctcaaacaaaactatgtggttggttgagcatcaccacc catgctcttataaaaccaaatcgtatgaggtggtttgtatttggggataccacctgcaaactgtattactacagaaatca aaacgatttccttccccttggtgaaattgaaatctctcatgcaacattccattttgatgccagcaacacagcaaaaccag gatgctttgaaataaggtcagaagaaaaagaatatatcctcgaagctccagatagaaatttgatgatgtattggcttaat gagcttcagagtagaagacgtcagttcaatcaacaccacaacattatgtctatagacaaaccaggtcatatgtactcaac taggcggcctgtaaatcttggaggacttagttcagctacttctgcagactacaaaggagactctaacattctaaattcgc catcatcagattctccgacagatcccattgaatcacaaaaagtcctgcagcctgctacgaacaccccctctgtaacaaat gtcaagacagagatacagttgacaagttcaaatttcaaaagaaaaagctcagaaaaaagaaaattagtaagaagcaatgc agcaaattcttcatcagaagattgggtcatgccagatcagtctgggatttatgagccgccggtaaaccagaccagacctc agagccagggtaaaatacgctctgcattggggaaactcaaattgaagaaaagcccagctagaagtgaggatatgcccata gtatctcctgctggaagtatctgccataggtgtaaacttatggaaaatgaaataacaatggtaaaggaagagcatcaaag cacggaggatgaactacaagctttacgtgaaattgtacgtttacagcaaaaagagctggatcaccaacggaaggagatag acacaaagcgggaatcagctgtgttagatgagactggactggcaaaaatgatgaccaaacgggacaaacatatcgtagaa ctagagtattgcttggcaacaagtaatgaggaaaaggctgtactagctcaacaaaacagaactgtggaatcagaattgag caatttgaaggaacaggtgtcaatgtttcagcatatgctggaagcaaaagatcaagtcatagtgaaattaaccaatgatg tgtttaaactggaacaaaataacaacaatgaaagcaaatccatgacactcccaagcagaggtagaagtatggacacagtc acaactcctgcatttatggagtcaaatatgaaagaaatagatcgtttaaaggatgtctgtagagcatacgaagatcaaca ccagttcttaacgaaggaaattctggaactaaatgagctcagaaaaagtgacaagaaaactctgaattcattatccatga acctagctaagacagaggcagagttttgtcagaccaaaagtaaatatctgttcctgttgaaagagctaaaggaacccatg agaggaggtgaccaatcatcccaggacatagtgaaccagctactagaagatgccatggaatcggatgaaaaggacagtga ggttaatgagagtgatccattattactggaggctcagaagttagagaagaggtcagaggaggacaactctagactcaagg aggtgaatgagagtgatccattattactggaggttcagaagttagagaagaggtcagaggaggtcaactctagactcaag aaagcagatgaagttatttcccatcaagtgaagtgggagaatttcatggttggaatgacagacaaaccttttgtaaaatc tacagagttgaagcttctggttcgatcaggagtgcctcatgagcacagagaatttatctggaatggttgtgttagacaat atgttggcaggctgagggagaaaaaaggaccaaattattacaaagaacttgtcaacaaaatgaaacatgtatcctggatt gatccagccactaaacagtcacaacccagtcatggggtactgctaggtatgtggtgctactggcttacaacagtcacaac ccaaccatggggtaatgccaggtatgtgatactactggcttacaacagtcacaacccagtcatagggtactgccaggtat gtggtactactggcttacaacagtcacaacccagtcatagggtactgccagaagaggagactttctggtgcttggtagcc attgtagactacatcatgccaaaagattactacagtaaaacactggtagcagcacaggcagaccagagagttctaaagga tttgattttagaaaagctacccagagttcacagccactttgaaatgcacaatgtagacatttctttgtttactttcaact ggttcttgaccatttttgttgacaacattccaactgaaacattcctacgtatttgggactcattcctgtttgaaggcagt aaggttttattccgatatgcactggctttcttcaaaattgcagaagaggacattctcagggcaaatggaccgttggagct caatcacttcatgagaacgctgggagagaaaatgtcagatgttccgcagatcagtcatattgcattccatggtatgaatc cattcccaatgaaaaacatatccagtaaaagacaaatctacatacagcatgtcaaagctgaattagaagaattgaacaga atgagagaggagctgaaattccagaacgacaatgtacaaagtacagatctatttagtgatgatgaaccagattcctaa |
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Protein
| Protein ID | pfu_aug2.0_97.1_23442.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_97.1_23442.t1 MAEVGGGEVKVERSSSSQCLIDLSPTSPRLSGDSAISNGSKTDDDNSEFPSKQPLSQNEELPDRHVVPQTKLCGWLSITT HALIKPNRMRWFVFGDTTCKLYYYRNQNDFLPLGEIEISHATFHFDASNTAKPGCFEIRSEEKEYILEAPDRNLMMYWLN ELQSRRRQFNQHHNIMSIDKPGHMYSTRRPVNLGGLSSATSADYKGDSNILNSPSSDSPTDPIESQKVLQPATNTPSVTN VKTEIQLTSSNFKRKSSEKRKLVRSNAANSSSEDWVMPDQSGIYEPPVNQTRPQSQGKIRSALGKLKLKKSPARSEDMPI VSPAGSICHRCKLMENEITMVKEEHQSTEDELQALREIVRLQQKELDHQRKEIDTKRESAVLDETGLAKMMTKRDKHIVE LEYCLATSNEEKAVLAQQNRTVESELSNLKEQVSMFQHMLEAKDQVIVKLTNDVFKLEQNNNNESKSMTLPSRGRSMDTV TTPAFMESNMKEIDRLKDVCRAYEDQHQFLTKEILELNELRKSDKKTLNSLSMNLAKTEAEFCQTKSKYLFLLKELKEPM RGGDQSSQDIVNQLLEDAMESDEKDSEVNESDPLLLEAQKLEKRSEEDNSRLKEVNESDPLLLEVQKLEKRSEEVNSRLK KADEVISHQVKWENFMVGMTDKPFVKSTELKLLVRSGVPHEHREFIWNGCVRQYVGRLREKKGPNYYKELVNKMKHVSWI DPATKQSQPSHGVLLGMWCYWLTTVTTQPWGNARYVILLAYNSHNPVIGYCQVCGTTGLQQSQPSHRVLPEEETFWCLVA IVDYIMPKDYYSKTLVAAQADQRVLKDLILEKLPRVHSHFEMHNVDISLFTFNWFLTIFVDNIPTETFLRIWDSFLFEGS KVLFRYALAFFKIAEEDILRANGPLELNHFMRTLGEKMSDVPQISHIAFHGMNPFPMKNISSKRQIYIQHVKAELEELNR MREELKFQNDNVQSTDLFSDDEPDS |
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