Gene
| Gene Model ID | pfu_aug2.0_97.1_23439 |
|---|---|
| Locus | scaffold97.1 : 208895 ... 233399 : + |
| To GenomeBrowser | scaffold97.1:208895..233399 |
| Genes list of scaffold | scaffold97.1 |
| Synonym | pfu_aug1.0_15458.1_46879 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| ribonuclease h1 | GO:0005488 GO:0008152 GO:0016787 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_97.1_23439.t1 | 1 | 1 | Cauli_VI | 2 | 43 | 3.5e-16 | 58.9 | 3.6e-19 | 7.6e-16 | 57.8 |
| pfu_aug2.0_97.1_23439.t1 | 2 | 1 | RNase_H | 30 | 65 | 4.0e-16 | 59.5 | 1.6 | 3300.0 | -1.7 |
| pfu_aug2.0_97.1_23439.t1 | 2 | 2 | RNase_H | 254 | 346 | 4.0e-16 | 59.5 | 1.9e-19 | 4.1e-16 | 59.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_97.1_23439.t1 | gi|260829299|ref|XP_002609599.1| | hypothetical protein BRAFLDRAFT_125021 [Branchiostoma floridae] | 3.0e-30 |
| pfu_aug2.0_97.1_23439.t1 | gi|676464705|ref|XP_009057006.1| | hypothetical protein LOTGIDRAFT_120973 [Lottia gigantea] | 8.0e-28 |
| pfu_aug2.0_97.1_23439.t1 | gi|675861528|ref|XP_009016324.1| | hypothetical protein HELRODRAFT_156844 [Helobdella robusta] | 3.0e-27 |
| pfu_aug2.0_97.1_23439.t1 | gi|560922340|ref|XP_006187369.1| | PREDICTED: ribonuclease H1 [Camelus ferus] | 4.0e-27 |
| pfu_aug2.0_97.1_23439.t1 | gi|557012056|ref|XP_006006606.1| | PREDICTED: ribonuclease H1 isoform X3 [Latimeria chalumnae] | 1.0e-26 |
Transcript
| Transcript ID | pfu_aug2.0_97.1_23439.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_97.1_23439.t1 atgccgttttatgcagtgagacaaggaagaaatacaggcatcttctcggactgggactcctgtcgcgatcaagtgaatgg cttttgtggtgcccagtttaaaaagttcaactcggaggaggcggccatgagatttatgtcaggtgataacactgggacag ggtatggcagacaacagtcctaccagaggtctgagagcgtagagtatgacagttacggcggctacagctgtgattcctcc ggtcatagtgaagattacagcagtggtggcagctactcaggtggctatagtagtggcagtagctactcaggtggctatag tagtggcagtagctactcaggtggctatagtggcggtaatagctattccagtagctacaacagtgggggtagctattcag gaagctacaggagtagtggcacatcaaataacaggtaccatccatacagaggagagaatacaacatacactggcactgtc agtgtttctgttggtgacaatgatatgacctcaaccattcactctcttcggaatggaataagtaatttggcaacacaagt caaggctttgaatcaacaaataaacagaattgagcagaataaaaaccaaggaagagggcgtaatactgttcgccactatt ctacaaactcctctaccaatggaacttgtaagctagcagttcaggaagtaccagtagacatgctgaagtgtatactgatg gttcttgtatcgataatggcaggggtggagccagggcaggctgcaaggaaagctataaaccaggccaaggacttgggata taacagtattacagtgaagactgacagtcagttccttatcaactctgtcacacaatggatgcctaactggaagcagaatg gatggaggttatcaaacagacagcctgtaaagaacaaaactgacttcgaagaactggacagggatatgcaggacataaat gttaaatgggtgcatgtacgtggtcaccaaggggaacaagggaatgaagcagcggatagactagctaatgagggagctgc aaggcctcactag |
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Protein
| Protein ID | pfu_aug2.0_97.1_23439.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_97.1_23439.t1 MPFYAVRQGRNTGIFSDWDSCRDQVNGFCGAQFKKFNSEEAAMRFMSGDNTGTGYGRQQSYQRSESVEYDSYGGYSCDSS GHSEDYSSGGSYSGGYSSGSSYSGGYSSGSSYSGGYSGGNSYSSSYNSGGSYSGSYRSSGTSNNRYHPYRGENTTYTGTV SVSVGDNDMTSTIHSLRNGISNLATQVKALNQQINRIEQNKNQGRGRNTVRHYSTNSSTNGTCKLAVQEVPVDMLKCILM VLVSIMAGVEPGQAARKAINQAKDLGYNSITVKTDSQFLINSVTQWMPNWKQNGWRLSNRQPVKNKTDFEELDRDMQDIN VKWVHVRGHQGEQGNEAADRLANEGAARPH |
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