Gene
| Gene Model ID | pfu_aug2.0_911.1_04679 |
|---|---|
| Locus | scaffold911.1 : 374 ... 8794 : + |
| To GenomeBrowser | scaffold911.1:374..8794 |
| Genes list of scaffold | scaffold911.1 |
| Synonym | pfu_aug1.0_202996.1_35779 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| probable asparagine--trna mitochondrial isoform x3 | GO:0000166 GO:0004812 GO:0005739 GO:0006418 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_911.1_04679.t1 | 3 | 1 | tRNA-synt_2 | 150 | 205 | 0.0 | 162.1 | 0.17 | 850.0 | -1.6 |
| pfu_aug2.0_911.1_04679.t1 | 3 | 2 | tRNA-synt_2 | 290 | 381 | 0.0 | 162.1 | 1.1e-16 | 5.4e-13 | 48.4 |
| pfu_aug2.0_911.1_04679.t1 | 3 | 3 | tRNA-synt_2 | 392 | 529 | 0.0 | 162.1 | 1.1e-35 | 5.3e-32 | 110.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_911.1_04679.t1 | gi|731236121|ref|XP_010631641.1| | PREDICTED: probable asparagine--tRNA ligase, mitochondrial isoform X3 [Fukomys damarensis] | 0.0 |
| pfu_aug2.0_911.1_04679.t1 | gi|260781616|ref|XP_002585901.1| | hypothetical protein BRAFLDRAFT_256666 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_911.1_04679.t1 | gi|602686232|ref|XP_007455353.1| | PREDICTED: probable asparagine--tRNA ligase, mitochondrial isoform X2 [Lipotes vexillifer] | 0.0 |
| pfu_aug2.0_911.1_04679.t1 | gi|466058604|ref|XP_004279891.1| | PREDICTED: probable asparagine--tRNA ligase, mitochondrial isoform X2 [Orcinus orca] | 0.0 |
| pfu_aug2.0_911.1_04679.t1 | gi|555992660|ref|XP_005908102.1| | PREDICTED: probable asparagine--tRNA ligase, mitochondrial isoform X2 [Bos mutus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_911.1_04679.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_911.1_04679.t1 atgccacaaagcgataaactgatgttagtagaaataagggatctacaactgaaaattagtgaaaagcaggatagtttcga agaagaaatttcacaactaaatgaaaaagttgataaacttcttcgatttattggctccacaccaggagatgaaaatatca cagcgaatgcagaatcattggtagactactttgaacaacaatatggtcacctcaaagaaatgggcaaatgttacattcaa gatgaatgtttcagattgaagagaacgaaactgagaatgtggaaaaacctcttgaataaacgcaaaatagcatactataa cgctatcaagtcccagggaacggcagaggtatacaaggaatttttcaacagagaggatatgtacattccccaaaaaatca gggagaagacaacccaccaggacactgataatcaaataaaaattaagaaagacttgaatgctgccaaactaaatgcacaa attcaaattctggaggataagattgtccactacacaacaatgtacctggaaatcgacgaagaacttcgttcagaaataac tgatcaatgtcctcctgatacgcataatattctcgaggatctttggctccagaatacaaaattggaggaagaaaagtcaa aaaagatatggcagaaaaaggaaaactggcttcgtaaattaccacaacaagaaaaagagatgacggatgtaaaatatggt acctgtgttaggatagagggtgagatggtggaaagtattggaccagatcaagacgaagaacttcttgccaagaaaataga cattctaggaaaatgtgatgcagacgaatttccctttcacatgaaagatgaagtcaaaccagataacatcagagaacatc tccatctccgacctaaaacagagtatatgcagtccatgttacgagtgaggaatgcagcttttatagctatacataactat tttcagtcacaaggttatttatacatcgatactccagttctaacatctaatgattgtgaaggagccggggaaacatttac aatacagagagtgaagggtgttaatacagacggcactgatcaagaatttttcggtaaacccgtacatttgacggtatcag gacagttacacctagaggctattactgggttgtcatacactgatgctgtaaaaattgtatctgagaataaagaattttca tcatttaagtggggtgaagacttttcaaaagcaaatgaaaaatacatagttaaaaagtgtggagatataccggtgtttgt aacagactatccagcaatattaaagccgttttatgccagagtaaatgatgattcctctacagtttcagcagtagatttgt tattaccagaagtaggtgaattgttcggaggttcattgagagaagagagatatgatgtattacaggaaaaactagccaag gaaggtctactagaaaaattaaactggtacctggacatcaggaagtatggctcagccccacacggtggatttggtatggg atttgacagatacctacagtttctggtcaacatgtccactgtcagagatacctgtcccttccctaggtaccatctgaact gtaaaatgtag |
|
Protein
| Protein ID | pfu_aug2.0_911.1_04679.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_911.1_04679.t1 MPQSDKLMLVEIRDLQLKISEKQDSFEEEISQLNEKVDKLLRFIGSTPGDENITANAESLVDYFEQQYGHLKEMGKCYIQ DECFRLKRTKLRMWKNLLNKRKIAYYNAIKSQGTAEVYKEFFNREDMYIPQKIREKTTHQDTDNQIKIKKDLNAAKLNAQ IQILEDKIVHYTTMYLEIDEELRSEITDQCPPDTHNILEDLWLQNTKLEEEKSKKIWQKKENWLRKLPQQEKEMTDVKYG TCVRIEGEMVESIGPDQDEELLAKKIDILGKCDADEFPFHMKDEVKPDNIREHLHLRPKTEYMQSMLRVRNAAFIAIHNY FQSQGYLYIDTPVLTSNDCEGAGETFTIQRVKGVNTDGTDQEFFGKPVHLTVSGQLHLEAITGLSYTDAVKIVSENKEFS SFKWGEDFSKANEKYIVKKCGDIPVFVTDYPAILKPFYARVNDDSSTVSAVDLLLPEVGELFGGSLREERYDVLQEKLAK EGLLEKLNWYLDIRKYGSAPHGGFGMGFDRYLQFLVNMSTVRDTCPFPRYHLNCKM |
|