Gene
| Gene Model ID | pfu_aug2.0_906.1_21259 |
|---|---|
| Locus | scaffold906.1 : 99716 ... 117885 : - |
| To GenomeBrowser | scaffold906.1:99716..117885 |
| Genes list of scaffold | scaffold906.1 |
| Synonym | pfu_aug1.0_11188.1_10283 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_906.1_21259.t1 | 3 | 1 | Fibrinogen_C | 33 | 221 | 0.0 | 289.5 | 0.0 | 0.0 | 171.3 |
| pfu_aug2.0_906.1_21259.t1 | 3 | 2 | Fibrinogen_C | 379 | 452 | 0.0 | 289.5 | 5.0e-24 | 3.7e-20 | 72.5 |
| pfu_aug2.0_906.1_21259.t1 | 3 | 3 | Fibrinogen_C | 458 | 527 | 0.0 | 289.5 | 1.0e-18 | 7.7e-15 | 55.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_906.1_21259.t1 | gi|704461321|ref|XP_010083745.1| | PREDICTED: fibroleukin [Pterocles gutturalis] | 2.0e-40 |
| pfu_aug2.0_906.1_21259.t1 | gi|543713665|ref|XP_005498133.1| | PREDICTED: fibroleukin-like [Columba livia] | 2.0e-40 |
| pfu_aug2.0_906.1_21259.t1 | gi|699592657|ref|XP_009866993.1| | PREDICTED: fibroleukin [Apaloderma vittatum] | 3.0e-40 |
Transcript
| Transcript ID | pfu_aug2.0_906.1_21259.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_906.1_21259.t1 atgccagatataaagggtccaaaactagcggacaatttgttggaccgtttgcttaccgtaattgtagagctgatcaaact tggagtgacatcggcaacattgtttgtacccaagagaccggagaaaacaacacttgtttattgtgatatggatttcggcc ttggtggctggacggttattcaaagacgagaaactggaaaagtcaacttcaaaagagtgtggaatgattacaagaatggc tttggagacgttaatacagattactggatcgggaatgatattatccatgacatgacctacccctctggaaaaagagcgat attcctgatggaagataaaaacgggaataaacgtttttctgaatactcgactttcattgttgcgtcggagggagaaggat ataaactaacaataagcggatacgtacatcgcagtggtgccgcaggggattctgtgcggtataatgcgaacggaaacaac ttcaccactattgaccgcgaccaagacaaagccgcctggggtaactgtgctgtccattatcacgggggatggtggtatgg tgggtgccacactgccaatcctaatggaatgctcggacatgataatgccggaggaatggtgtggtcatcgtggaaaggaa tgtcgtattcaatggcgagaatggatgaagtcggggattgtgatcctactgaatgtgaaagagatgaaaagtgcgtggtc agagatggattgcttacctgtgtaaaaaccgaggattgtgggattcctgaaaatgagaacaataaagaggtaaattttac aacaactgagtacggcagcaatgcaactgtacgatgtcaggacaaatataagtcggatgacccctctactgatcaacaat tggtaacttgtcaggccaatggatcatggaccgcatctacactgaactgcgaatgggaaggatgtcccgatattgagacg atacaacttccagcatgtttgacactgttatattcatcaggaacttacatgcaggattataatctatacaaggctaacag tagctctggacagctctctgggccacatctatacgtagaatgtcagtctaatcatacatgggaacattggatagaagtaa catgcacgaaaggtatagactgtgaagaaatcaaaccatcatttcctatgtcaggtgctttcacaatagagataaattca cagagaagcacacttgtgtattgtgatatggcctttatgactggaggatggacgattgttcagcgcagggaaaagggtat catttcctttaaacgaaactggaacgattataaacatggattcggaaacgtgaaccatgattattggataggagatccat tgacgggtactgcaaacgggatgaacttcagcactgttgatcgcgatctggatttggcaggttggaattgtgctggaagc tttaatgggggttggtggtacagagcttgtcaccttgctaatcctaacggtgtcttgggatccgactcccccgggggtat ggtgtggggcacatggagaggaatccattacagtatggccagattcgtcatcatgatcaaagattga |
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Protein
| Protein ID | pfu_aug2.0_906.1_21259.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_906.1_21259.t1 MPDIKGPKLADNLLDRLLTVIVELIKLGVTSATLFVPKRPEKTTLVYCDMDFGLGGWTVIQRRETGKVNFKRVWNDYKNG FGDVNTDYWIGNDIIHDMTYPSGKRAIFLMEDKNGNKRFSEYSTFIVASEGEGYKLTISGYVHRSGAAGDSVRYNANGNN FTTIDRDQDKAAWGNCAVHYHGGWWYGGCHTANPNGMLGHDNAGGMVWSSWKGMSYSMARMDEVGDCDPTECERDEKCVV RDGLLTCVKTEDCGIPENENNKEVNFTTTEYGSNATVRCQDKYKSDDPSTDQQLVTCQANGSWTASTLNCEWEGCPDIET IQLPACLTLLYSSGTYMQDYNLYKANSSSGQLSGPHLYVECQSNHTWEHWIEVTCTKGIDCEEIKPSFPMSGAFTIEINS QRSTLVYCDMAFMTGGWTIVQRREKGIISFKRNWNDYKHGFGNVNHDYWIGDPLTGTANGMNFSTVDRDLDLAGWNCAGS FNGGWWYRACHLANPNGVLGSDSPGGMVWGTWRGIHYSMARFVIMIKD |
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