Gene
| Gene Model ID | pfu_aug2.0_852.1_07953 |
|---|---|
| Locus | scaffold852.1 : 195957 ... 204145 : + |
| To GenomeBrowser | scaffold852.1:195957..204145 |
| Genes list of scaffold | scaffold852.1 |
| Synonym | NA |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| complement c1q tumor necrosis factor-related protein 3 isoform x2 | GO:0001818 GO:0005515 GO:0009892 GO:0010647 GO:0023056 GO:0031323 GO:0044421 GO:0044710 GO:0048523 GO:0048585 GO:0048878 GO:0050707 GO:0050714 GO:0051224 GO:0051240 GO:0051259 GO:0071704 GO:1902531 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_852.1_07953.t1 | 1 | 1 | C1q | 21 | 144 | 9.3e-22 | 77.3 | 7.2e-26 | 1.1e-21 | 77.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_852.1_07953.t1 | gi|512895809|ref|XP_004898100.1| | 3.0e-10 | |
| pfu_aug2.0_852.1_07953.t1 | gi|512895805|ref|XP_004898099.1| | 5.0e-10 | |
| pfu_aug2.0_852.1_07953.t1 | gi|34365353|emb|CAE45998.1| | hypothetical protein [Homo sapiens] | 7.0e-10 |
Transcript
| Transcript ID | pfu_aug2.0_852.1_07953.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_852.1_07953.t1 atgaaaagtccgtgtccagtttctacttcagcaaaacgtggaactccggaaggagttgttgcatttcatgcttatgcaac acattcacgtatacttggtgatcaacagacaattatttttgatcatgtgataatgaacttggcttccgggtacgatgcgc aagacgggcaattcacagcgccagtaccagggctgtattccttctcaacgagtctaatggcagacgtcggacactatgtc catgctcaaatggtgcataatggtggaactatatcgtatgtgtttgctgcgaaaagtgcctatgattatgaggatgacac aggaactgctgtggcaaacgtggtcctacaaaaaggtgacaaagtctgggtacggcatgaaaacgatcccaccggtgtag cctcactggaaggaaaatattcagcattttcttga |
|
Protein
| Protein ID | pfu_aug2.0_852.1_07953.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_852.1_07953.t1 MKSPCPVSTSAKRGTPEGVVAFHAYATHSRILGDQQTIIFDHVIMNLASGYDAQDGQFTAPVPGLYSFSTSLMADVGHYV HAQMVHNGGTISYVFAAKSAYDYEDDTGTAVANVVLQKGDKVWVRHENDPTGVASLEGKYSAFS |
|