Gene
| Gene Model ID | pfu_aug2.0_830.1_01167 |
|---|---|
| Locus | scaffold830.1 : 102217 ... 117625 : - |
| To GenomeBrowser | scaffold830.1:102217..117625 |
| Genes list of scaffold | scaffold830.1 |
| Synonym | pfu_aug1.0_2686.1_44450 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_830.1_01167.t1 | 4 | 1 | NHL | 403 | 417 | 3.8e-06 | 26.5 | 0.011 | 32.0 | 4.7 |
| pfu_aug2.0_830.1_01167.t1 | 4 | 2 | NHL | 493 | 509 | 3.8e-06 | 26.5 | 0.007 | 21.0 | 5.3 |
| pfu_aug2.0_830.1_01167.t1 | 4 | 3 | NHL | 530 | 553 | 3.8e-06 | 26.5 | 2.9e-05 | 0.086 | 12.8 |
| pfu_aug2.0_830.1_01167.t1 | 4 | 4 | NHL | 576 | 587 | 3.8e-06 | 26.5 | 1.6 | 4700.0 | -2.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_830.1_01167.t1 | gi|260823288|ref|XP_002604115.1| | hypothetical protein BRAFLDRAFT_71597 [Branchiostoma floridae] | 3.0e-12 |
| pfu_aug2.0_830.1_01167.t1 | gi|260823248|ref|XP_002604095.1| | hypothetical protein BRAFLDRAFT_71616 [Branchiostoma floridae] | 6.0e-11 |
| pfu_aug2.0_830.1_01167.t1 | gi|260792762|ref|XP_002591383.1| | hypothetical protein BRAFLDRAFT_86890 [Branchiostoma floridae] | 2.0e-09 |
| pfu_aug2.0_830.1_01167.t1 | gi|701387475|ref|XP_009994196.1| | PREDICTED: tripartite motif-containing protein 2 isoform X1 [Chaetura pelagica] | 3.0e-09 |
Transcript
| Transcript ID | pfu_aug2.0_830.1_01167.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_830.1_01167.t1 atgtcagttaaattggcacatgcgcaagcagctaccccatattctgtgagcgaaacagaagcacctgctcaaacgattct ctgctcgcatactaaggatggtccgatttccaatgacactaaagaactattgacagaaacaaggaacatagacgagcatt ccctgacatgtacagaccatggatatcaagctgcctttcactgtgagagatgtgacataccagtctgtgtcaaatgtgtt acagggattcatcagtgtcacaaaatggttgacctctcagaaatattgcaaagagaaaaagaattgcttcaaaatgatat caacagaatagaaaatgacatcttaccaagtcttgtggaaaggagagaagaattagatttaaacaataaacgaattggta caaatatgcagcaaatagcaaaagacatggaagatgagattcactcttttcaaacggaaattgaaagagtccataatgag agaataaaaaacctaaatagtgtccgtgattcccagtcagcaatttttgatggccgttccaaagacatagaaatgaagat ttctttatacaaagggaagctttcagaatacagagacgccattgaaacagaaagcctttcgaaaatcatcagtattacga aaataaaagagtcccctataaatattggaagtaaaccaaaattacaagaacctcctgtgtttatacctggtaacatatgt tttgtcaaagaaaaccttgggaaattacatgatccctctgtttcaaatgctggagaagaagttgagaaattacattttct ctctctgtcatgtgctaaagaaagtcttggaaaatcccagatttcctctgtatcaagtgctagagaaaatcaaggaaaat cacatgtccactttgtatcaagtaccaggactgagtttaagtccaaagagtcatcgtatcgtcgcataatttcgttttca ttgatatgtgccttactagctgctgcacttgcctatggggtcagtaatcatactcgtccaccggaagataattcagtgat attaacgacaccaatcattcagtcaaagtttgtatctcctttaaagttatggacatcattgtttattacaaaagaaggtg acgtatggctaggtgcccctaaatccagagaactaataatggtggatatcaaagggcaaatactgagaaggaggaaaata aagatccaacctagggcacttgctgtgatggacaatggtgacatcatcataagtccgtccacttcctctagttctgtcat tatacttcttaaagacgatagggaaaaggtgcttgatatatcagatatgggtagtttgggggtatcagttactgttaatc aggagatactgatttgtgcattcgatggccgagttctcatagtcaatggtgacggtagtaacgtcagacaaatatataaa ggctctgcaaatgcctctgtatttcatgctgttcagaacacagatggtaatatctacatcagtgattggggtaaacaagc tgtggtaatagtcagtaaggatggacaagttctgtcaacgctaacacacacaacaaaaggacaaagattgagattgccac gtggactggtggtggacaagatgggaaacgttttatgtgcagatgtttacaatcgtgttatatacattatcgatcagagc cagcatattagggagttggttgaacttaaagatagcccactttaccttgctgtggacagtaatcactatctgtggataac acagaatgatgggactgttcacgttgtgaaatacttatctcaatga |
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Protein
| Protein ID | pfu_aug2.0_830.1_01167.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_830.1_01167.t1 MSVKLAHAQAATPYSVSETEAPAQTILCSHTKDGPISNDTKELLTETRNIDEHSLTCTDHGYQAAFHCERCDIPVCVKCV TGIHQCHKMVDLSEILQREKELLQNDINRIENDILPSLVERREELDLNNKRIGTNMQQIAKDMEDEIHSFQTEIERVHNE RIKNLNSVRDSQSAIFDGRSKDIEMKISLYKGKLSEYRDAIETESLSKIISITKIKESPINIGSKPKLQEPPVFIPGNIC FVKENLGKLHDPSVSNAGEEVEKLHFLSLSCAKESLGKSQISSVSSARENQGKSHVHFVSSTRTEFKSKESSYRRIISFS LICALLAAALAYGVSNHTRPPEDNSVILTTPIIQSKFVSPLKLWTSLFITKEGDVWLGAPKSRELIMVDIKGQILRRRKI KIQPRALAVMDNGDIIISPSTSSSSVIILLKDDREKVLDISDMGSLGVSVTVNQEILICAFDGRVLIVNGDGSNVRQIYK GSANASVFHAVQNTDGNIYISDWGKQAVVIVSKDGQVLSTLTHTTKGQRLRLPRGLVVDKMGNVLCADVYNRVIYIIDQS QHIRELVELKDSPLYLAVDSNHYLWITQNDGTVHVVKYLSQ |
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