Gene
| Gene Model ID | pfu_aug2.0_819.1_31183 |
|---|---|
| Locus | scaffold819.1 : 3274 ... 56635 : - |
| To GenomeBrowser | scaffold819.1:3274..56635 |
| Genes list of scaffold | scaffold819.1 |
| Synonym | pfu_aug1.0_3665.1_08688 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_819.1_31183.t1 | 2 | 1 | VWA | 32 | 199 | 0.0 | 258.3 | 3.50002e-41 | 1.0e-37 | 129.5 |
| pfu_aug2.0_819.1_31183.t1 | 2 | 1 | VWA_2 | 32 | 191 | 5.3e-26 | 91.7 | 1.1e-14 | 3.2e-11 | 43.6 |
| pfu_aug2.0_819.1_31183.t1 | 2 | 1 | VWA_3 | 32 | 191 | 1.1e-12 | 47.8 | 7.2e-07 | 0.0021 | 17.7 |
| pfu_aug2.0_819.1_31183.t1 | 2 | 2 | VWA_2 | 233 | 390 | 5.3e-26 | 91.7 | 1.6e-17 | 4.6e-14 | 52.8 |
| pfu_aug2.0_819.1_31183.t1 | 2 | 2 | VWA | 234 | 387 | 0.0 | 258.3 | 9.89317e-43 | 2.9e-39 | 134.5 |
| pfu_aug2.0_819.1_31183.t1 | 2 | 2 | VWA_3 | 234 | 384 | 1.1e-12 | 47.8 | 4.6e-10 | 1.4e-06 | 28.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_819.1_31183.t1 | gi|742243790|ref|XP_010863419.1| | PREDICTED: collagen alpha-4(VI) chain-like [Esox lucius] | 0.0 |
| pfu_aug2.0_819.1_31183.t1 | gi|260800507|ref|XP_002595171.1| | hypothetical protein BRAFLDRAFT_240983 [Branchiostoma floridae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_819.1_31183.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_819.1_31183.t1 atgttatacgtcgcggttcttctgtgtttcgccgtcgcctcaagggcggcgactttttcgaagagagcaacgggaggatg cgatacacaatcagacattacatttttattggactcatccgatagtgtcggaaaagataactttcagaaacaattgcaat tcgtacaaaatactgtcaatgatttaacaatagcctccgataaagcaaagataagtgttgtgacgtttggcaatggtgtc tacaatcagttcttttttaaccaatatagttcgaaggcagatattgtaaatgcaatatcttctacaccgtactatggagg aaggacgcatacatctgacgcaatccgttacgtcagtcaaacttcattcaatcccatccatggagcgagaaataacgccg ctcacgtgacagtactcgtcacgaacggccattcaaccacaacagacatcacaaaactcaaagcgcaaacagcaaaggat aataatataataatgtacggcgtaggagtcggaagcgcagtggatatgaatgaattatccggaatagcaagtgatccaaa aggaagatacgttcttcatgcggaaagttatggatcgttgagttctctatctggagtgttatccgcaaaactatgtaacg aattacctaccagtctgaatcaacttccagcaccaacaagctgtttgactaaggctgattttgcatttgtggtggactct tcttcaagtatcgactctggtactttccataaactggaaaacgtactgaaaacagccgtcacaaagatggacataggtcc ggacaaagtccatgtcggactcatgcagtacagcagctatccttctatccaattcccactgactcaatatactactagag ccgatgcccttaaagccgtagagaagatgtcccagatgagcggcagcagtaacacggcagatgccatcaagttcgcttcc aatcagttattctctcagaatagtggagcccgtcctaatgttccaagaattgaagttgtgttaactgacggatattccat caataatgctgcaaccacaacacaagctgacaaagcccgacaaaacaacataggaatgatctcagttggaattggtaacc gtgtgaacaacgccgagctgaacagcatcgcagacgacaacagcaaggtagtgctcgcgggatccatcagtgaccctgat gccattgttgataagattttacagaaagcttgccaggtacagtcaacagtggcaccaacaactgctggagatggcaagtg ttcattcaaaggacgaatgtacaagacaggagagcattggatggatggctgtgattatgaatgtgtatgtgaggatggta gcaatggacattacaaatgcacaaacagatgtcctttgtaccatgatttgcccagtgagtgtacacttgtgagacaacaa ggacaatgctgtctacaacctgtctgtaatttccgtcaaagtatttcaaaaactgaaggtagtggaaaaggcacaacttc aactggaataaaggtatgtcagtaccagagtaagcagttcttccaaggacagacgtggagagatggttgtgatagacaat gcacgtgtgtcaatgctacagagggactctactcttgtgactccatctgcccgacctattccaatctaccctcctactgt aagctacagaaagctccaggagaatgctgtcataaacctgtatgtgagtttaaccaacaacacggatccttcactggaac tgggtctataagtggaaaaggagtagatgtatgtgtatatcagggagtatcataccgtcaaggagctacatggaaagttg gatgtgataccaaatgtacatgtgaaaatgctgtacatggttactacggttgtgtcagctcatgtccaacctataataac atcccagttggttgctatgagaaaaagaagccaagagattgctgtacgaccctacaatgtgacagtggttactttgtgag ctcctcccttaactaccattccctcgggaacggagcaaacatccatataaataatcctataggggcccagcagtatgtca cccccaccatgctgaaaaactcaacccaacctggatcaggcagtacagaaatgtttggaaacacaatcaatggctgtttg tataagggtaacctgtatgtacagaaccaagtttgggaggatggctgtgaattatcatgtatttgtactgatgccagcaa gggatcttactcctgcagagaaaaatgtcctacatacggacagatcccttactcctgtcattacgtatcagatccaaacg atccctgctgtcagaagccggtatgtaggtatgatcctaccacaggtaaaaccttcactcccatacctgtattcaaaccc acagtgacaggatccggagtggtggagccaccaaaacctggagtcgtcactgattcttctgtgtacacgtcaaggatcac catcaaccctcttgtcaacaccccagcacctcctaccgcaaagactaatgttactggaggaataggatactgcctataca agggtaaggtatacaagcagggagagaactgggaggatggatgtgattataactgtgtgtgtgaagactccaggacagga tactacaagtgtatcgagaagtgtatgacatataatagtatgccactgggttgcacaatggagacagatcccagagatcc atgctgtaaaaaacgcacatgtctcactaccaaaaattctcaagccacacctgctcctgtacatgggggatccacaccta ccaagatccccactctcgctcctgcaattactccatctattggtcacactttcatcgtccctggaatatacctgacccct gcccctcctgcgacttatgcaggattcatgcagcccacccctgaaccctttacattcaaacctgatctgttctccacccc ttacaagttatcaacccttgtgccagacatgaccttgggtgtatggcatgccttggtcccacccggtttatacctcaccc cagcaccataccggtcaaatgcagcaagaatacatgtacgacctacacccgaccctggtccaacatacagacctgaactt ttctcaacaccatttttgcaaccaacttttgcaccagtaaccattaataagagttcaacattcttggcaccgaatttcta tatcactccatatccaggacttacatatgctccttatatgaagcccactcctgcctttggacaaacatatgcacctcatg cgttcccaacaccatacaaactaccaacccttgcaccaggacagaccatgggcattggtcaaactcttattcctccagga atatatttgacaacttcatatggtgcaacactggcttctggccagactcttgttccaccattctacttgacaccagctcc agggatgacatatggccctgacaagagaccgacacttgcttcaggtcagacatatgccccttacctcttccctactccct ttaaggtaccaactttggcccctgggcagactcttgcacctggccaaacattgattcctcctggtatttacctgacacct ggacctggtatgacatatgctctaaacttacaaccaacacctgtcccagggcaaacatatgctcctcatgttttccccac tccacctaaattcccaactctagcacctgggcaaaccttgtcccctggtcagacattgatacctccattctatctgaccc cagctcctggtaagacatatcctcctaaccaaagaccaacaccatacccagaaggtacttatgctccagaaattttcccc actcccttcaaggtaccaaccttagctccaggtcaaacaatccctcaaggaggtaccttgattccacctggaatctgcct aacacctgcaccttactcaacatatcctcctggaagactaccaaaaccatggccaaatcatacctacagaccaggtgtat tccccacaccttacctgcctcccactcttgcaccaggtgtaacacttgaacctggtcagaccttgattccaccaggaatg tacctcactcccataccatatcagacctatccaccaaacctgcatccaactccagcacctggtcagacctatcgtcctga tgtgttcccgacacctttcaaaataccaactcttgcaccaggtgtaacactgggaccatcccaaaccttgatcccaccag gaatatatctgacacctgcacctttccagacctatgctccttacaagcagcctaccccagctgctggtcaaacctaccgt ccaggtgtgttccaaactccctaccttccaccaacattaccccaaggctacacattagcaggtggccagacattgattcc tccacatatgtacttgactcccttcccaggaggaacatatgcaccaaacatgcttccagcaccagcccctggacaaacat atgcacaatacctgtttccaactccatatcacataccaacacttgcaccaggtcaaacaatggcaactggacaaacattg atcccaccaggtatatacctcacgccagctcctggacaaacttatcccccaaatatgagaccaactccaggtccaggaat gacatatgcaacacatgtgttcccaacaccatacaaactaccaacccttgcaccaggacaggccatgggcattggtcaaa ccctcattcctccaggaatatatttgaccccctcatatggtaaaacatatgcacccgacaagagaccaactccagatcca ggccagacgtatgctccatatttattccccacaacgtttgtacttccaactctagctcctggtcagagccctgcagtagg tcagaccttcttcccacctcatatctatcttacaccagggcctggactgacctatgcaccaaatgagcgaccaactcccg cacctggtcttacatattctcctgacctctttccaactccattcaaaatatcaacactggctcctggacaaacactaggt cccatgcagaccctcataccaccaggtatttatcttaccccagcccctggtctgacatacgctccaaacatgaggccaac cccagcagccgatcagacgtaccaacctggtgtattccctaccccctacaaactccccacccttgccccaggatcaacct ttggtatcgaccagaccttcatccctccttaccaccacctgacaccccttcctggtttcacctatgcccccaataagaga ccaacaccttacccagggggcacctatgcacctaacctcttcctcgccctggaaccttataacagatccacccctgaacc taaaccccaaccagtacctacagccttaccaggtgtcatctcaggtataggagtaggagtaaaaggaaaagtaactactc ctcccccttgtgtggacaaactacccacatgtgccagctttgcatccagatgtaacgatcctaactacaaagctattcta gagaccaactgcaggaggacttgtaactgttgtggagatacagttcgtaaaattggacccctgtggatgacatcttgctt tgccttagagtctgcaaatggagatcttcttaaactttttcatcgaactcaattaatagatgttcaaattatcaatgctg ttcatgtttttcaaatgttaccgtctttatcaactatcgttccaagtacatctagagttcacgatttgatttgttcgctc ttaaagaaacgaaatgtagatcatctagcatttcagctttgtggaaagggatatgaaaaatcactgtatgagcaagactt gggaatgctgttagggattttcgaagttccaggttgcaagtttttatttcacagtagggcaaagctgagaggtataatgt accactccttggactacaccaggacaacatccagggactcttacacagtcaagttcaaaaacaaaagaggttttgtagag tatggacagatttgctggtttgtgagatgtgaggataattatttgcagagtctttttgtatgcatttcagtactaagaga aaaaagtataaatgtgtttgatagacatcactctggcattactgctgatgactga |
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Protein
| Protein ID | pfu_aug2.0_819.1_31183.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_819.1_31183.t1 MLYVAVLLCFAVASRAATFSKRATGGCDTQSDITFLLDSSDSVGKDNFQKQLQFVQNTVNDLTIASDKAKISVVTFGNGV YNQFFFNQYSSKADIVNAISSTPYYGGRTHTSDAIRYVSQTSFNPIHGARNNAAHVTVLVTNGHSTTTDITKLKAQTAKD NNIIMYGVGVGSAVDMNELSGIASDPKGRYVLHAESYGSLSSLSGVLSAKLCNELPTSLNQLPAPTSCLTKADFAFVVDS SSSIDSGTFHKLENVLKTAVTKMDIGPDKVHVGLMQYSSYPSIQFPLTQYTTRADALKAVEKMSQMSGSSNTADAIKFAS NQLFSQNSGARPNVPRIEVVLTDGYSINNAATTTQADKARQNNIGMISVGIGNRVNNAELNSIADDNSKVVLAGSISDPD AIVDKILQKACQVQSTVAPTTAGDGKCSFKGRMYKTGEHWMDGCDYECVCEDGSNGHYKCTNRCPLYHDLPSECTLVRQQ GQCCLQPVCNFRQSISKTEGSGKGTTSTGIKVCQYQSKQFFQGQTWRDGCDRQCTCVNATEGLYSCDSICPTYSNLPSYC KLQKAPGECCHKPVCEFNQQHGSFTGTGSISGKGVDVCVYQGVSYRQGATWKVGCDTKCTCENAVHGYYGCVSSCPTYNN IPVGCYEKKKPRDCCTTLQCDSGYFVSSSLNYHSLGNGANIHINNPIGAQQYVTPTMLKNSTQPGSGSTEMFGNTINGCL YKGNLYVQNQVWEDGCELSCICTDASKGSYSCREKCPTYGQIPYSCHYVSDPNDPCCQKPVCRYDPTTGKTFTPIPVFKP TVTGSGVVEPPKPGVVTDSSVYTSRITINPLVNTPAPPTAKTNVTGGIGYCLYKGKVYKQGENWEDGCDYNCVCEDSRTG YYKCIEKCMTYNSMPLGCTMETDPRDPCCKKRTCLTTKNSQATPAPVHGGSTPTKIPTLAPAITPSIGHTFIVPGIYLTP APPATYAGFMQPTPEPFTFKPDLFSTPYKLSTLVPDMTLGVWHALVPPGLYLTPAPYRSNAARIHVRPTPDPGPTYRPEL FSTPFLQPTFAPVTINKSSTFLAPNFYITPYPGLTYAPYMKPTPAFGQTYAPHAFPTPYKLPTLAPGQTMGIGQTLIPPG IYLTTSYGATLASGQTLVPPFYLTPAPGMTYGPDKRPTLASGQTYAPYLFPTPFKVPTLAPGQTLAPGQTLIPPGIYLTP GPGMTYALNLQPTPVPGQTYAPHVFPTPPKFPTLAPGQTLSPGQTLIPPFYLTPAPGKTYPPNQRPTPYPEGTYAPEIFP TPFKVPTLAPGQTIPQGGTLIPPGICLTPAPYSTYPPGRLPKPWPNHTYRPGVFPTPYLPPTLAPGVTLEPGQTLIPPGM YLTPIPYQTYPPNLHPTPAPGQTYRPDVFPTPFKIPTLAPGVTLGPSQTLIPPGIYLTPAPFQTYAPYKQPTPAAGQTYR PGVFQTPYLPPTLPQGYTLAGGQTLIPPHMYLTPFPGGTYAPNMLPAPAPGQTYAQYLFPTPYHIPTLAPGQTMATGQTL IPPGIYLTPAPGQTYPPNMRPTPGPGMTYATHVFPTPYKLPTLAPGQAMGIGQTLIPPGIYLTPSYGKTYAPDKRPTPDP GQTYAPYLFPTTFVLPTLAPGQSPAVGQTFFPPHIYLTPGPGLTYAPNERPTPAPGLTYSPDLFPTPFKISTLAPGQTLG PMQTLIPPGIYLTPAPGLTYAPNMRPTPAADQTYQPGVFPTPYKLPTLAPGSTFGIDQTFIPPYHHLTPLPGFTYAPNKR PTPYPGGTYAPNLFLALEPYNRSTPEPKPQPVPTALPGVISGIGVGVKGKVTTPPPCVDKLPTCASFASRCNDPNYKAIL ETNCRRTCNCCGDTVRKIGPLWMTSCFALESANGDLLKLFHRTQLIDVQIINAVHVFQMLPSLSTIVPSTSRVHDLICSL LKKRNVDHLAFQLCGKGYEKSLYEQDLGMLLGIFEVPGCKFLFHSRAKLRGIMYHSLDYTRTTSRDSYTVKFKNKRGFVE YGQICWFVRCEDNYLQSLFVCISVLREKSINVFDRHHSGITADD |
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