Gene
| Gene Model ID | pfu_aug2.0_782.1_07876 |
|---|---|
| Locus | scaffold782.1 : 55377 ... 68805 : - |
| To GenomeBrowser | scaffold782.1:55377..68805 |
| Genes list of scaffold | scaffold782.1 |
| Synonym | pfu_aug1.0_5310.1_23754 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_782.1_07876.t1 | 1 | 1 | Bromodomain | 152 | 231 | 3.3e-22 | 78.2 | 1.1e-25 | 8.4e-22 | 76.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_782.1_07876.t1 | gi|585691892|ref|XP_006821331.1| | PREDICTED: bromodomain and PHD finger-containing protein 3-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_782.1_07876.t1 | gi|632947684|ref|XP_007889173.1| | PREDICTED: bromodomain-containing protein 1 isoform X3 [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_782.1_07876.t1 | gi|260798747|ref|XP_002594361.1| | hypothetical protein BRAFLDRAFT_114040 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_782.1_07876.t1 | gi|632947680|ref|XP_007889171.1| | PREDICTED: bromodomain-containing protein 1 isoform X1 [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_782.1_07876.t1 | gi|632947682|ref|XP_007889172.1| | PREDICTED: bromodomain-containing protein 1 isoform X2 [Callorhinchus milii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_782.1_07876.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_782.1_07876.t1 atgtatgtataccggtacatcacctgtacatactcagagatcgggataggcaatcagctgtggtgcctgttttgtagctg tggtaattcagtaacagtatttagcacagtgagtggagattgtatccgtaaacttgttggacacagaaatctagtcacaa gtgtatatgttaatccaagaaataaattacaggtgttgacatcatctttagatcagactatactgatatgggactaccaa gatggcattgttctgaagacaaagaatgataagcagagtaatgccctgaaggaacagctgaagtattggcagagactgag acaagacctggagaaagccagactactagtggagcttatacgtaaacgagagaaaatcaaaagagaacagctgcgggtgc atcagatggccatggaattgcagttacagccatttgctgtgttattacgtaatacgctggacctattagtggacaaggat acctctagcttctttacagagccagtatcattagaggaggtaccagactacagggattacattgaccaccccatggactt tgagacgatgaggaataagatagacaaccaccagtacaagaccatggacgattttgaggccgatttcgaccttatcataa agaattgtatgaagtataatgccaaagataccgtcttctacagagctgccgtcaagcttagagaccagggtggcatggtg attagagcttcaaggcgtacagtggagagggttggatacgacccctcaacaggtctacatcttgagacggcccccaacac aactgatcctgtggttcttgaagacattgatagtttcctagaacataaagagagcataccattggaagagcagctgagaa ttttattggacaaaatggatgcagcacatgcaagtcggaaacctggtaaatcaaagcttgccaagaggattcgtcaggag atagtcaaggtgcgtaggaagctggccctgcagaaaggacaaagggccagtgatctggacgagacggtggacacagcatc tgagacgaactacgactccatggctgacgatagcagaatagaaactcctgttcctgatacaccaaagtcacctactcaca agtctcctagcactgataaggagaaaactcctaacatagataaggagaaggcgggcgttggtaggggtgctaataaagac acacccacccgaggtcgagggagagggcggggcagaggaagatggggaagggctagtaaaagtagactggaatccgagtc tgaatcaccagtggccacaaggaaaatagaaaagagaaggtcatcagatagttcaaggacaaccgagtcttccacatcct caaaaaacgaagacagcaattcaggtcatcctgcactcagtggtgtcaataggagaacggccgttttatttagtaagaag attaaatccaacaaaaacgacagttctgctccaagcagtcctggtaccccaacccgcccagcaacaccacctaggaaagt ggggaagggtcgagggtcaaggaaccgatctcagtcacagcatgagaaggtagactctccacaacctcccgttctggaac ccatgatgaggaccacgagagggccggcaagtccaaaaagtccaaaatcaccggcaatgaggaaaaggtcggcaagtgct ctgggttcgccagagagggagggcagaccaactccccccaaacgaacaaactctcttactgagcctttggctttttccga gcctccagatataacaaagaaagatagctttctgcgttataggggaccagacaatttacgaagttcttcagaatcagata gcacttctgtgattagcactagcgacgattccttgtcggacagctcgatggggtcatctagttccaatagtagatcagca tgtttactatgcttggtgcgtgcttttttcatgcctggtgtagaacttaattcgcacggaatgcccaagctgtctgagga aggcacagaaagtgattccagcaccttagcacctcccacccaggtaaaagcacccctccccagtctcagcttaggcaagg agtccttggctcttgctaaaagtcagtaccttgtaaagctaaaacgtagcgtcttgtaa |
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Protein
| Protein ID | pfu_aug2.0_782.1_07876.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_782.1_07876.t1 MYVYRYITCTYSEIGIGNQLWCLFCSCGNSVTVFSTVSGDCIRKLVGHRNLVTSVYVNPRNKLQVLTSSLDQTILIWDYQ DGIVLKTKNDKQSNALKEQLKYWQRLRQDLEKARLLVELIRKREKIKREQLRVHQMAMELQLQPFAVLLRNTLDLLVDKD TSSFFTEPVSLEEVPDYRDYIDHPMDFETMRNKIDNHQYKTMDDFEADFDLIIKNCMKYNAKDTVFYRAAVKLRDQGGMV IRASRRTVERVGYDPSTGLHLETAPNTTDPVVLEDIDSFLEHKESIPLEEQLRILLDKMDAAHASRKPGKSKLAKRIRQE IVKVRRKLALQKGQRASDLDETVDTASETNYDSMADDSRIETPVPDTPKSPTHKSPSTDKEKTPNIDKEKAGVGRGANKD TPTRGRGRGRGRGRWGRASKSRLESESESPVATRKIEKRRSSDSSRTTESSTSSKNEDSNSGHPALSGVNRRTAVLFSKK IKSNKNDSSAPSSPGTPTRPATPPRKVGKGRGSRNRSQSQHEKVDSPQPPVLEPMMRTTRGPASPKSPKSPAMRKRSASA LGSPEREGRPTPPKRTNSLTEPLAFSEPPDITKKDSFLRYRGPDNLRSSSESDSTSVISTSDDSLSDSSMGSSSSNSRSA CLLCLVRAFFMPGVELNSHGMPKLSEEGTESDSSTLAPPTQVKAPLPSLSLGKESLALAKSQYLVKLKRSVL |
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