Gene
| Gene Model ID | pfu_aug2.0_782.1_07875 |
|---|---|
| Locus | scaffold782.1 : 47254 ... 54825 : - |
| To GenomeBrowser | scaffold782.1:47254..54825 |
| Genes list of scaffold | scaffold782.1 |
| Synonym | pfu_aug1.0_5310.1_23754 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| bromodomain and phd finger-containing protein | GO:0004402 GO:0008270 GO:0016573 GO:0018024 GO:0034968 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_782.1_07875.t1 | 2 | 1 | PWWP | 114 | 114 | 1.7e-16 | 60.1 | 0.44 | 6500.0 | -2.6 |
| pfu_aug2.0_782.1_07875.t1 | 2 | 2 | PWWP | 180 | 285 | 1.7e-16 | 60.1 | 1.2e-20 | 1.7e-16 | 60.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_782.1_07875.t1 | gi|524876759|ref|XP_005095090.1| | PREDICTED: peregrin-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_782.1_07875.t1 | gi|241699681|ref|XP_002413146.1| | bromodomain and PHD finger-containing protein 1, brpf1, putative [Ixodes scapularis] | 0.0 |
| pfu_aug2.0_782.1_07875.t1 | gi|242022015|ref|XP_002431437.1| | Bromodomain and PHD finger-containing protein, putative [Pediculus humanus corporis] | 0.0 |
| pfu_aug2.0_782.1_07875.t1 | gi|390334994|ref|XP_790891.3| | 0.0 | |
| pfu_aug2.0_782.1_07875.t1 | gi|620979039|ref|XP_007670062.1| | PREDICTED: bromodomain and PHD finger-containing protein 3-like [Ornithorhynchus anatinus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_782.1_07875.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_782.1_07875.t1 atgtctgctttctgcattttctccacagctcctcaatctaacgctcagaaaccaggtaatagtcttgctaatcatagcac tcaatctgctaacgatcctttcccagcatgcactgtttctcctgtcatcattcaccattcgcccagtatagagcttatat gtgaaccagattgtatagagctctttataagtgacgaccccaagattaacaccaaaggtccaaattttgacgaaaattcc aaatcaaatttactttttcatcacatcaccaagaatttgaatcatgaaaaaatgtggaaatgcaagtcaaaggatggcag aaacgcacagaagctcttaaaggatgacacaccaaggaaatcaatggcaagtgcaaataagtcagttcagactgcatcaa agaagcagaagacaactttgggtagcgtcaatgtcgatcaaaaagttttagatggaaatacgtcagaagttgaagagaat gaacaaagtcgtgcccatcgtagcggaagttgtgactcggaggacatgatcccactggagcccctggacttagtgtgggc caaatgtcgaggttacccatggtaccccgcactcatcataaatcctaagatgcccaagaccggatatttccacaacggtg ttcctatccctgtaccccctgatgatgtgttagccttgcagaggaaatacgatgaaccagtctacttaatactctttttt gatacaaaacgaacttggcagtggctacctcgcaacaagttagaaccattaggagtagattctggcttggacaaggctaa actattagagaacaagaaacccaacatccgtaaggccgtacagaaagcttacgagaaggccatactccaccgatgcagtg tgacgggcgatccaaaacaaattgtagacacgggtcgtttataa |
|
Protein
| Protein ID | pfu_aug2.0_782.1_07875.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_782.1_07875.t1 MSAFCIFSTAPQSNAQKPGNSLANHSTQSANDPFPACTVSPVIIHHSPSIELICEPDCIELFISDDPKINTKGPNFDENS KSNLLFHHITKNLNHEKMWKCKSKDGRNAQKLLKDDTPRKSMASANKSVQTASKKQKTTLGSVNVDQKVLDGNTSEVEEN EQSRAHRSGSCDSEDMIPLEPLDLVWAKCRGYPWYPALIINPKMPKTGYFHNGVPIPVPPDDVLALQRKYDEPVYLILFF DTKRTWQWLPRNKLEPLGVDSGLDKAKLLENKKPNIRKAVQKAYEKAILHRCSVTGDPKQIVDTGRL |
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