Gene
| Gene Model ID | pfu_aug2.0_770.1_01116 |
|---|---|
| Locus | scaffold770.1 : 77906 ... 85060 : + |
| To GenomeBrowser | scaffold770.1:77906..85060 |
| Genes list of scaffold | scaffold770.1 |
| Synonym | pfu_aug1.0_8190.1_67818 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_770.1_01116.t1 | 3 | 1 | zf-C3HC4_3 | 11 | 58 | 1.3e-06 | 28.0 | 1.0e-09 | 1.3e-06 | 28.0 |
| pfu_aug2.0_770.1_01116.t1 | 1 | 1 | zf-RING_2 | 11 | 56 | 1.4e-06 | 28.0 | 1.1e-09 | 1.4e-06 | 28.0 |
| pfu_aug2.0_770.1_01116.t1 | 3 | 1 | zf-C3HC4_2 | 12 | 55 | 3.1e-06 | 27.0 | 2.5e-09 | 3.1e-06 | 27.0 |
| pfu_aug2.0_770.1_01116.t1 | 3 | 1 | zf-C3HC4 | 12 | 55 | 4.0e-06 | 26.3 | 3.3e-09 | 4.0e-06 | 26.3 |
| pfu_aug2.0_770.1_01116.t1 | 3 | 2 | zf-C3HC4_3 | 97 | 125 | 1.3e-06 | 28.0 | 0.031 | 39.0 | 4.0 |
| pfu_aug2.0_770.1_01116.t1 | 3 | 2 | zf-C3HC4_2 | 98 | 125 | 3.1e-06 | 27.0 | 0.64 | 790.0 | 0.1 |
| pfu_aug2.0_770.1_01116.t1 | 3 | 2 | zf-C3HC4 | 98 | 125 | 4.0e-06 | 26.3 | 0.28 | 350.0 | 0.9 |
| pfu_aug2.0_770.1_01116.t1 | 3 | 3 | zf-C3HC4 | 170 | 184 | 4.0e-06 | 26.3 | 7.2 | 8900.0 | -3.6 |
| pfu_aug2.0_770.1_01116.t1 | 3 | 3 | zf-C3HC4_2 | 176 | 186 | 3.1e-06 | 27.0 | 7.8 | 9700.0 | -3.3 |
| pfu_aug2.0_770.1_01116.t1 | 3 | 3 | zf-C3HC4_3 | 587 | 598 | 1.3e-06 | 28.0 | 3.8 | 4700.0 | -2.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_770.1_01116.t1 | gi|291226350|ref|XP_002733156.1| | PREDICTED: tripartite motif-containing protein 2-like [Saccoglossus kowalevskii] | 2.0e-22 |
| pfu_aug2.0_770.1_01116.t1 | gi|260824639|ref|XP_002607275.1| | hypothetical protein BRAFLDRAFT_88223 [Branchiostoma floridae] | 6.0e-22 |
| pfu_aug2.0_770.1_01116.t1 | gi|260811694|ref|XP_002600557.1| | hypothetical protein BRAFLDRAFT_70065 [Branchiostoma floridae] | 5.0e-21 |
| pfu_aug2.0_770.1_01116.t1 | gi|291243269|ref|XP_002741525.1| | PREDICTED: E3 ubiquitin-protein ligase TRIM56-like [Saccoglossus kowalevskii] | 7.0e-21 |
Transcript
| Transcript ID | pfu_aug2.0_770.1_01116.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_770.1_01116.t1 atggattacggtacccttttggaaatagttaaatgcggtgtatgtaaagaccgtatgaagcagccaaaaaccttgccatg taatcattcattctgtatggactgtatagacgaaacccatcgatgtcgaccttataccacaaacgatgccaaatgtccgg tctgtagaagacgatttgtcctcacatatggaggtgcagccgaattgccggacaatttccatttgaatgagctattggaa aaattggaaaaggcgcgtaatgacggaaccgacaataaaacaccaataccatgtcaaaaatgtcctgaaaaatcagcaac aagtacatgtgtagaatgttacctgaatttgtgtgacaaatgtgtagagactcattcagcaataccggatgcaacgaatc ataatgtcttcaatctatcagatctggatcaatttcagagagaatctcttgtcagaatgacaatggtcacagcaaagtgc atgaaacacaatctgttaccgagtcgatattgtcttgataaactttgcatgaagcttgtctgtccagaatgctgtctaga tgaccataagacccatgatcttttgaatcttaatgaaagcgcttcgctttcaaaagaaaaattgaaaaacatttcagaaa aagcgcaactaatggaagtgaaaacaagaatagagattgatcgatttgatcaaataattgcagataaatcagcagcaaag gactctttcaaggttcaggtatctatgctgtttgcagaatttagagaaaagctatcgaaatttgaggaacaacttttgga taaaggatgcaagaaatacgacgaagccatctggaaagtggaaagacataagagagaatcagagagcatgatagcaaata ttgcagagattgttcagaacgcaaaagctactcaaaaagtaggaacaaacgcatttctagtgtcagaacaacatcattta aagggatggttggaagaagtcgaaaacgaaagagcagaaatgaatgactcggataacaacgttaatatagaaatagttaa agaaaaggattctgttaaaatatcagagggacaaatttaccaaatccaagagacggcagcttcgcagggaagagaaggat ttgtaagctcagaatatgaaaaggccatgaatgttgttagaataacggaacatccagacgaagatttgagagaagacaga atgtatgaaaatacccatcaaattgatagtcgaagaccagaaagaactagaagtgtcctctcacttccccttccttcccc acctagccattcatacagtagacatctgagctatcctagcttgaatgttgaagatagagataggtattgtaactttccgg atagcagacaagaatttccaacccgactttcatttgaaagaaagatgcatatagatgtctcatcaatgatatcaggtcta acggtgacacggaataatgaaattatcgccgcattcggaaatgagaaaaaggtgttgataatgaaatatgatgaaagaac tcgtaaaacaactgtttgctatgatgtcaaaaggaactggatccaaccttgggatgccgcagcctcgtatgatgaaaaga gaaagagaactaccgtatatgtcacagattcagacaataatcaaggatacattgtatcatttgaaatcaaaaagaaggaa gttgttaaaaccaaaacactggtttcgtcaaggagactgcaacccaagggtataacaaccaatgacagcgacattttcgt atgcgactctgaacaacgatgcatcattgtttaccaagcaagtggacagtttaagcacaagattggattggcaaacacat tcacgcacccgatgtacataggcagagtggatgatgacaccctcatagtgactgatgatataagaggttctattgtccgc gtgaagacgaacggcgagttcgtgngaccggtacccttaagaaactacttatctagaataagacctcttgactcaagttt tgtacattaa |
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Protein
| Protein ID | pfu_aug2.0_770.1_01116.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_770.1_01116.t1 MDYGTLLEIVKCGVCKDRMKQPKTLPCNHSFCMDCIDETHRCRPYTTNDAKCPVCRRRFVLTYGGAAELPDNFHLNELLE KLEKARNDGTDNKTPIPCQKCPEKSATSTCVECYLNLCDKCVETHSAIPDATNHNVFNLSDLDQFQRESLVRMTMVTAKC MKHNLLPSRYCLDKLCMKLVCPECCLDDHKTHDLLNLNESASLSKEKLKNISEKAQLMEVKTRIEIDRFDQIIADKSAAK DSFKVQVSMLFAEFREKLSKFEEQLLDKGCKKYDEAIWKVERHKRESESMIANIAEIVQNAKATQKVGTNAFLVSEQHHL KGWLEEVENERAEMNDSDNNVNIEIVKEKDSVKISEGQIYQIQETAASQGREGFVSSEYEKAMNVVRITEHPDEDLREDR MYENTHQIDSRRPERTRSVLSLPLPSPPSHSYSRHLSYPSLNVEDRDRYCNFPDSRQEFPTRLSFERKMHIDVSSMISGL TVTRNNEIIAAFGNEKKVLIMKYDERTRKTTVCYDVKRNWIQPWDAAASYDEKRKRTTVYVTDSDNNQGYIVSFEIKKKE VVKTKTLVSSRRLQPKGITTNDSDIFVCDSEQRCIIVYQASGQFKHKIGLANTFTHPMYIGRVDDDTLIVTDDIRGSIVR VKTNGEFVXPVPLRNYLSRIRPLDSSFVH |
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