Gene
| Gene Model ID | pfu_aug2.0_759.1_31139 |
|---|---|
| Locus | scaffold759.1 : 76668 ... 94385 : - |
| To GenomeBrowser | scaffold759.1:76668..94385 |
| Genes list of scaffold | scaffold759.1 |
| Synonym | pfu_aug1.0_1824.1_37128 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_759.1_31139.t1 | 2 | 1 | vWA-TerF-like | 39 | 203 | 1.6e-15 | 57.4 | 1.5e-10 | 3.8e-07 | 30.1 |
| pfu_aug2.0_759.1_31139.t1 | 2 | 1 | VWA | 40 | 219 | 0.0 | 232.6 | 2.1e-36 | 5.1e-33 | 114.2 |
| pfu_aug2.0_759.1_31139.t1 | 2 | 1 | VWA_2 | 40 | 221 | 3.2e-30 | 105.4 | 1.9e-16 | 4.6e-13 | 49.6 |
| pfu_aug2.0_759.1_31139.t1 | 3 | 1 | VWA_3 | 122 | 204 | 7.4e-11 | 41.9 | 1.0e-06 | 0.0025 | 17.5 |
| pfu_aug2.0_759.1_31139.t1 | 2 | 2 | vWA-TerF-like | 371 | 535 | 1.6e-15 | 57.4 | 4.2e-09 | 1.0e-05 | 25.4 |
| pfu_aug2.0_759.1_31139.t1 | 2 | 2 | VWA | 372 | 551 | 0.0 | 232.6 | 3.0e-38 | 7.5e-35 | 120.2 |
| pfu_aug2.0_759.1_31139.t1 | 2 | 2 | VWA_2 | 372 | 553 | 3.2e-30 | 105.4 | 5.3e-18 | 1.3e-14 | 54.6 |
| pfu_aug2.0_759.1_31139.t1 | 3 | 2 | VWA_3 | 372 | 389 | 7.4e-11 | 41.9 | 0.1 | 260.0 | 1.2 |
| pfu_aug2.0_759.1_31139.t1 | 3 | 3 | VWA_3 | 456 | 536 | 7.4e-11 | 41.9 | 5.6e-07 | 0.0014 | 18.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_759.1_31139.t1 | gi|594628953|ref|XP_007168060.1| | PREDICTED: collagen alpha-1(XII) chain isoform X1 [Balaenoptera acutorostrata scammoni] | 3.0e-33 |
| pfu_aug2.0_759.1_31139.t1 | gi|594628959|ref|XP_007168063.1| | PREDICTED: collagen alpha-1(XII) chain isoform X4 [Balaenoptera acutorostrata scammoni] | 3.0e-33 |
| pfu_aug2.0_759.1_31139.t1 | gi|119569133|gb|EAW48748.1| | collagen, type XII, alpha 1, isoform CRA_a [Homo sapiens] | 4.0e-33 |
| pfu_aug2.0_759.1_31139.t1 | gi|564246396|ref|XP_006262311.1| | PREDICTED: collagen alpha-1(XII) chain [Alligator mississippiensis] | 4.0e-33 |
| pfu_aug2.0_759.1_31139.t1 | gi|594628957|ref|XP_007168062.1| | PREDICTED: collagen alpha-1(XII) chain isoform X3 [Balaenoptera acutorostrata scammoni] | 4.0e-33 |
Transcript
| Transcript ID | pfu_aug2.0_759.1_31139.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_759.1_31139.t1 atggcccctggactaagcaaagcagatttcacgaatttctcagtttcccgtcttttcatgcctgctgttgtagatattga gctgatttttgattgtgatgttaatgagctcgtagcggatgtgatgattcttttggatgcatctaattcaataggaagaa ccaatttcggcaagcaaatagatgctgtgaaaaaattggcgaatttctttgttctcaacattgacaaattacaaattgga acagtcacgttttcttcaaccgttaaaccaatatcagaattgaacaagtatgcccaacatcacgatgatccatccacgtt aaagactaatacgttgttggccatagattccatcgctaacaattatgaagctaggggtacaaaaacagcggaggccttaa agtatgtgatagaacacagttttactaaagaggagggtgaccgtcctgaagcaccaaacatactaattgttatgacagac ggagcatctgatgacaagaacgcaaccctacgagaggcggacagtctacgaagacataacattacgtgtattccaatagg aattggcaacagggaaacattatcattggatgaactgaaacggatggcaaccaatgagagctatgtttacatactgaaga gttacgatgcactagacagttttcttggaacgttaaaaaatatgatttgtaacattggcatcgccgaaatgtcaagcaag gcaccaaggcagactgtttctccatggaagcaacatgttaagtcaacacacaggcctacaacgctacctacgtctacaag gagtattgtaacaacataccatcggaccaagaataaacaacatactgcaacacaccaacaacagcatactaccgatagaa agaaaatgacgtcaactgagggaccaaaggcgtatgctactccaattcctatttcaacaacaacaacaatgagaccagat attgtatcaacatacaggcctacagcgctacctacgtctactaagagcactattacacctttttatcgagcgaaaagcaa acaatacattactgccaaagagcacactaccaacaaactactatatgattgtgatgtagatgagcttgttgccgacgtgg tgattcttatggacgcatcaggatctataggaagaaccaattttgtcaagcaaataaatgcagtgaaaaaattggtggat ttctttgctcttaacgttgacaagttacagatcggcgctgtcactttttcgtcaaccgtacaaacggaattaaaattaaa cagatatgcccgttttcgtgatgatcctaccactttaaagaagtacacgttaatggcaatagattacatcacttctaatt acgaagctggaggtacacacacagcagatgccttaaaattcgtaatggaacacagttttactaaagaggagggtgaccgt cctgaggcaccaaacattctcattgtaatgacagacggagcatctgatgacaagattctaactctacaagaggcagacaa tctacacaggcatggaataacgtgtatcccgataggaattggtaccaataaaacactgtcattggatgaattgaaacgga tggcaaccaatgagagctatgtttatatgttgaagagttacgatgccttggacagctttcttggaacgttaaaaaatatc atttgtaacattggaatcaccctaacatcaagtgaggcacctatgacgactgttaccccatcgccgattccaaaaataac aacaaagactggctatcttgtatcaacagtcaagcctacaaagctgcagacgccttcgaggaacaccgttgcaccatacc atcgaacgaaaacaaaacagcacactaccgacaaacagcacaataccgacaaacaacaaaatgatgacaacgagaagtcg gatgaggaatacctatcagattttcggtcgtcacctgccgtacaagcagcggaagtgacgacattaacagccgttggtat aattgcgattggtactgccatctgctgttgcaagaaggtgtgtctagcgggcaagaggcgtgaagaagacgatgatgatg agaaaaaagtcaaacatgttaaagaggtgtctctatcacagtcccctgatggatacttaaattcagcaaagaggctaaac aatttcatgttctaa |
|
Protein
| Protein ID | pfu_aug2.0_759.1_31139.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_759.1_31139.t1 MAPGLSKADFTNFSVSRLFMPAVVDIELIFDCDVNELVADVMILLDASNSIGRTNFGKQIDAVKKLANFFVLNIDKLQIG TVTFSSTVKPISELNKYAQHHDDPSTLKTNTLLAIDSIANNYEARGTKTAEALKYVIEHSFTKEEGDRPEAPNILIVMTD GASDDKNATLREADSLRRHNITCIPIGIGNRETLSLDELKRMATNESYVYILKSYDALDSFLGTLKNMICNIGIAEMSSK APRQTVSPWKQHVKSTHRPTTLPTSTRSIVTTYHRTKNKQHTATHQQQHTTDRKKMTSTEGPKAYATPIPISTTTTMRPD IVSTYRPTALPTSTKSTITPFYRAKSKQYITAKEHTTNKLLYDCDVDELVADVVILMDASGSIGRTNFVKQINAVKKLVD FFALNVDKLQIGAVTFSSTVQTELKLNRYARFRDDPTTLKKYTLMAIDYITSNYEAGGTHTADALKFVMEHSFTKEEGDR PEAPNILIVMTDGASDDKILTLQEADNLHRHGITCIPIGIGTNKTLSLDELKRMATNESYVYMLKSYDALDSFLGTLKNI ICNIGITLTSSEAPMTTVTPSPIPKITTKTGYLVSTVKPTKLQTPSRNTVAPYHRTKTKQHTTDKQHNTDKQQNDDNEKS DEEYLSDFRSSPAVQAAEVTTLTAVGIIAIGTAICCCKKVCLAGKRREEDDDDEKKVKHVKEVSLSQSPDGYLNSAKRLN NFMF |
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