Gene
| Gene Model ID | pfu_aug2.0_73.1_10230 |
|---|---|
| Locus | scaffold73.1 : 370832 ... 437249 : + |
| To GenomeBrowser | scaffold73.1:370832..437249 |
| Genes list of scaffold | scaffold73.1 |
| Synonym | pfu_aug1.0_7850.1_17195 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| homeobox protein hox-a2 | GO:0003002 GO:0006351 GO:0007420 GO:0009653 GO:0030154 GO:0050794 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_73.1_10230.t1 | 2 | 1 | Homeobox | 280 | 290 | 1.6e-21 | 75.6 | 0.86 | 13000.0 | -4.1 |
| pfu_aug2.0_73.1_10230.t1 | 2 | 2 | Homeobox | 480 | 536 | 1.6e-21 | 75.6 | 1.1e-25 | 1.6e-21 | 75.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_73.1_10230.t1 | gi|555983704|ref|XP_005903747.1| | PREDICTED: homeobox protein Hox-A2 [Bos mutus] | 0.0 |
| pfu_aug2.0_73.1_10230.t1 | gi|115494928|ref|NP_001069322.1| | homeobox protein Hox-A2 [Bos taurus] | 0.0 |
| pfu_aug2.0_73.1_10230.t1 | gi|640810858|ref|XP_008062028.1| | PREDICTED: homeobox protein Hox-A2 [Tarsius syrichta] | 0.0 |
| pfu_aug2.0_73.1_10230.t1 | gi|602656685|ref|XP_007434074.1| | PREDICTED: homeobox protein Hox-A2 [Python bivittatus] | 0.0 |
| pfu_aug2.0_73.1_10230.t1 | gi|594085172|ref|XP_006066126.1| | PREDICTED: homeobox protein Hox-A2 [Bubalus bubalis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_73.1_10230.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_73.1_10230.t1 atgtcttctgcacatggaaggaacatttacattgaaagggaaagaaacccgtcaatttaccccgatggagatgctgtcaa atataaatcaagccaatgtaaagaaaatatagaggtcatttctatccattcttcagatgacgaggagagccaaacagaaa cgtgtgacagttcagaaaatgagaatgaagccactgaatatacctacatctttgacctctatgaatttgatgaacaactt aaaggtgaaggtcaaacatctgggtcagcatcagattcaaacgagattaaaaattgtactttagtaggtactgagatttt atctgaagaaaagaacagctctgttagtaaggaacttgataaacatgacacgtttaatgtggcagatgatttggggctga aattagaaaaccaaagaaattttgatatatacgccattacagagatttctgaagagaaaggtggagtaaaggaggaaatt tcgttgaaaaaggatgtagaaacacaagctgacaatttatatgaagagatttgcgtgtctgataccacacatattgatta tgattatgatgatttcgatctcaattacctggaagatgaaaactgcaatcaacagttgtgtaaggatgataacaatccag cagaaagtagagtgttcgattggacaacaaaagaggactatagttctgataccgaatgcagttctgatgagagtgttaac ttttcacctggtgaagaatggtcatggctggatgaatttgccgatgctgatacagatagatacagcaccagaaattatta tgaaagatatcaagataccgatagatacagcacaagagaatattataaccaaacatatccagataccgatagatacaata ttccacgacatcataaccagatatattcgaacactcattgctttaattttcacccaagattccggagcttcagtcatcac ggtccagagattttctacagaagaagatggcgtggaatgacgagtatggacgagagccgggaatccggattcatcaacag tcaaccgtgtatagcagagtttatgaccactatcccgctactcaatgaaacaattcaaagtccatccatcacctccgatg ggatgcggggatacatgcagccctatgccccggcgcctccaagcatggctcaaatggacgacccaaggatcataggcggg ggtgaccccgggggtcgggatcataccggagccatctcgaacgtgaaaattcctgattttccatggatgagagagaaaaa gaacataaggaaatcctcttcatcatcatccagcgccggtcagggacccgatatagattactcgccctccgttccaccaa ttacaaacagcagtcacaatgcttcttcagagcgcagcaccggaagtagcaatagcggaagtagtggtggaggaacacgg agactgcgcactgcttataccaatactcaactactggaattagaaaaagagttccacttcaataaatatctgtgtcgacc tagaagaattgaaatagcagcatcattagatctcactgaaagacaggtgaaggtttggttccaaaatagaagaatgaagt tcaagaggcagacacaagctcaaagacaaaaagccgagagcgaggtgaaagggttttcatttgacgggaatttagacagt cctacgtcatcggaaggaagttgtgaaagacttgatcatatggaaagtaaacacgatcacaaagatccggattgttcacg tatggaaaacaaaacaagcagcgatgttttgaaaatagatcctcttggcgaaagtgaaaatgccagaggcctactcggga acgagagcacctctccagatatacaaacagaaagaggttacagacgacctacagaagtagatcaaaagaaaattgtttgt gacgtagatgattttacagatggcgcgtcgtctgctatggaaaatttggaagaaaatcagtgttctccaaacgaaagttt acatagcatgcagagcgatgtgagccctgtatcctcaaagtgtcctgtgtctgtgatacccaataattcgatgacgtcat cgccagtgacttcatcggacatagaatcgattgaccttgccgacaaactgattggagaagcagaaaaagcgaattcttgt aaagcaaatgcgttgcaggttggacaaacttcgcgtctatcgtgtgatactgtttcaccactcagtgtagaaaacgcttc atcaaacaacgcgtcagagcaaaatggtgtgaccgagcatttcacagcttcaagtcaaccgcagaacagcgagatttcag tcgactgcaaccaaatttccccgaaggaaaaatctattgaaagcctaaatgtacagtctgtatctaattcattatcaccc cacagtcacatggtttttgatagttttcaggacgaaaggaattcttattcaaatcaaaataacttccctacatatcagaa cgttcacaactccccatatgttggaaaaaggagaggtgctaacggttaccatctttctggaaattatccggattcctttt gtggtccgacccgaccttattcttcgcgttacaatggccatggcgggatttactcaaacgtgcgagcgcggcatggaaac ggatttggcggtcctaatatagaaaatatgtggcaatatgatccgtcaagtcaaaacagcgccgctcaaccccaatatca ttacaggatgaactttggcatgaatggtaataacatttattctcaaaactttcctcgattcaataacagtaattccatgg agaccggggtcccagcaatttctggtccgggttttaattccagttttactgtaaaatctgcagcctattccccgcagacg acacgaatggaccctcagacatcaacagcgctttatagtagcaattacacggataactttcctggcaatgtcaatctagg gatgaacgcgacaatctgccaatcgcccaggcaacaacatctcttacaaggagattctacaatacggactcaaaccggac ataacatgacggacggtaattattctccggatcagtttaatggcaacccgaacgagccggcatacggggatgtggggtct tctgattttacgagtatttttaaggttaaaaggttttccttgtttgcctcccctagagattatttatggattctctgcca attgttctaa |
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Protein
| Protein ID | pfu_aug2.0_73.1_10230.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_73.1_10230.t1 MSSAHGRNIYIERERNPSIYPDGDAVKYKSSQCKENIEVISIHSSDDEESQTETCDSSENENEATEYTYIFDLYEFDEQL KGEGQTSGSASDSNEIKNCTLVGTEILSEEKNSSVSKELDKHDTFNVADDLGLKLENQRNFDIYAITEISEEKGGVKEEI SLKKDVETQADNLYEEICVSDTTHIDYDYDDFDLNYLEDENCNQQLCKDDNNPAESRVFDWTTKEDYSSDTECSSDESVN FSPGEEWSWLDEFADADTDRYSTRNYYERYQDTDRYSTREYYNQTYPDTDRYNIPRHHNQIYSNTHCFNFHPRFRSFSHH GPEIFYRRRWRGMTSMDESRESGFINSQPCIAEFMTTIPLLNETIQSPSITSDGMRGYMQPYAPAPPSMAQMDDPRIIGG GDPGGRDHTGAISNVKIPDFPWMREKKNIRKSSSSSSSAGQGPDIDYSPSVPPITNSSHNASSERSTGSSNSGSSGGGTR RLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKFKRQTQAQRQKAESEVKGFSFDGNLDS PTSSEGSCERLDHMESKHDHKDPDCSRMENKTSSDVLKIDPLGESENARGLLGNESTSPDIQTERGYRRPTEVDQKKIVC DVDDFTDGASSAMENLEENQCSPNESLHSMQSDVSPVSSKCPVSVIPNNSMTSSPVTSSDIESIDLADKLIGEAEKANSC KANALQVGQTSRLSCDTVSPLSVENASSNNASEQNGVTEHFTASSQPQNSEISVDCNQISPKEKSIESLNVQSVSNSLSP HSHMVFDSFQDERNSYSNQNNFPTYQNVHNSPYVGKRRGANGYHLSGNYPDSFCGPTRPYSSRYNGHGGIYSNVRARHGN GFGGPNIENMWQYDPSSQNSAAQPQYHYRMNFGMNGNNIYSQNFPRFNNSNSMETGVPAISGPGFNSSFTVKSAAYSPQT TRMDPQTSTALYSSNYTDNFPGNVNLGMNATICQSPRQQHLLQGDSTIRTQTGHNMTDGNYSPDQFNGNPNEPAYGDVGS SDFTSIFKVKRFSLFASPRDYLWILCQLF |
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