Gene
Gene Model ID | pfu_aug2.0_73.1_10229 |
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Locus | scaffold73.1 : 327132 ... 333314 : + |
To GenomeBrowser | scaffold73.1:327132..333314 |
Genes list of scaffold | scaffold73.1 |
Synonym | pfu_aug1.0_3384.1_23293 |
Manual annotation
Annotation by Blast2GO
Annotation | GO |
---|---|
homeobox protein hox-b3a | GO:0009653 GO:0048513 |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_73.1_10229.t1 | 1 | 1 | Homeobox | 155 | 211 | 1.6e-21 | 75.6 | 7.1e-25 | 3.5e-21 | 74.5 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_73.1_10229.t1 | gi|726997026|ref|XP_010388839.1| | PREDICTED: homeobox protein Hox-B3 [Corvus cornix cornix] | 4.00001e-40 |
pfu_aug2.0_73.1_10229.t1 | gi|560898645|ref|XP_006175767.1| | PREDICTED: homeobox protein Hox-A3 [Camelus ferus] | 6.0e-39 |
pfu_aug2.0_73.1_10229.t1 | gi|742113307|ref|XP_010872941.1| | PREDICTED: homeobox protein Hox-B3a [Esox lucius] | 6.0e-39 |
pfu_aug2.0_73.1_10229.t1 | gi|556992572|ref|XP_006000645.1| | PREDICTED: homeobox protein Hox-D4-like isoform X1 [Latimeria chalumnae] | 8.0e-39 |
pfu_aug2.0_73.1_10229.t1 | gi|556958405|ref|XP_005990110.1| | PREDICTED: homeobox protein Hox-B3a-like isoform X1 [Latimeria chalumnae] | 4.0e-38 |
Transcript
Transcript ID | pfu_aug2.0_73.1_10229.t1 |
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Definition | - |
>pfu_aug2.0_73.1_10229.t1 atgcataaaacagcatattataacacaggaccggcgttccagaattattttgtgactgaaaatggttacccatacgattc tccgtacggtcaggccaatccgggggcggtggacggtagttattaccctcattcatcatgtgcaatgcaaaattcccatc atcaatcgcaggggacaggtccggattttaatcaccccccatttacgggacctgagggatacggtccaccttgcatacca accccgaatatttcgtgtggcactggattaaattcaccaaatcctgttgctatcggaaaacagggtgagatatatccgtg gatgaaggaatctcggcaaaattcaaagcaaagacaagcgcaacatcaacagcaacagcagcaacaaaccgcaacctcgc aacaacagcagcaatcacagaattcaccgacgcaaggttcccagaacgctagtgagccgacaaagcgagcacgtacagca tacaccagtgcccaacttgtagagcttgaaaaggaattccacttcaacaggtatctatgccgtccgaggcgtatcgaaat ggccgctttgctgagtctatccgaaagacaaataaaaatttggttccaaaataggagaatgaaatataagaaagagcaaa gacaaaaaccgaattcggacaaaaaaggcaaacatgacggaaacctgtctggttcggatacggacagtcaggggtcgctt tccggtatgaatgatggactcggtagtgattgtggtggaaaattaagtcctgacacaattgaaccatcccataatactca ttctggaatgataggacttcccggacaacatacgaattctatccaaagatctccacaaatggcgagcccgaatcatctac agtcggaacagcataatattcggggtcgatatccagataacaaccattactaccatgataatagtccacactccccctct tttaaaccttctatctcacctaataatgctcatgttaacaataatactatgagtgccaacgaaatgtgtttacagcagaa ctctatgtctcattcgtacatgcacccgagtcacccggggtctatgtacaatggcgtccattatatgaacaatgcgcata tgcaagggcctatttatcatgacgtttccggaatggaaccggaaacggaaatgggtgtacacgcaatgccttctggtaca gtttatccttccggtttaccttgctcatcaagtagtatggggtataacacagggggatttgattatgtaccaaaactaac tcatttgtag |
Protein
Protein ID | pfu_aug2.0_73.1_10229.t1 |
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Definition | - |
>pfu_aug2.0_73.1_10229.t1 MHKTAYYNTGPAFQNYFVTENGYPYDSPYGQANPGAVDGSYYPHSSCAMQNSHHQSQGTGPDFNHPPFTGPEGYGPPCIP TPNISCGTGLNSPNPVAIGKQGEIYPWMKESRQNSKQRQAQHQQQQQQQTATSQQQQQSQNSPTQGSQNASEPTKRARTA YTSAQLVELEKEFHFNRYLCRPRRIEMAALLSLSERQIKIWFQNRRMKYKKEQRQKPNSDKKGKHDGNLSGSDTDSQGSL SGMNDGLGSDCGGKLSPDTIEPSHNTHSGMIGLPGQHTNSIQRSPQMASPNHLQSEQHNIRGRYPDNNHYYHDNSPHSPS FKPSISPNNAHVNNNTMSANEMCLQQNSMSHSYMHPSHPGSMYNGVHYMNNAHMQGPIYHDVSGMEPETEMGVHAMPSGT VYPSGLPCSSSSMGYNTGGFDYVPKLTHL |