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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_73.1_10229
Locus scaffold73.1 : 327132 ... 333314 : +
To GenomeBrowser scaffold73.1:327132..333314
Genes list of scaffold scaffold73.1
Synonym pfu_aug1.0_3384.1_23293

Manual annotation
Annotation by Blast2GO
Annotation GO
homeobox protein hox-b3a GO:0009653 GO:0048513

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_73.1_10229.t1 1 1 Homeobox 155 211 1.6e-21 75.6 7.1e-25 3.5e-21 74.5

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_73.1_10229.t1 gi|726997026|ref|XP_010388839.1| PREDICTED: homeobox protein Hox-B3 [Corvus cornix cornix] 4.00001e-40
pfu_aug2.0_73.1_10229.t1 gi|560898645|ref|XP_006175767.1| PREDICTED: homeobox protein Hox-A3 [Camelus ferus] 6.0e-39
pfu_aug2.0_73.1_10229.t1 gi|742113307|ref|XP_010872941.1| PREDICTED: homeobox protein Hox-B3a [Esox lucius] 6.0e-39
pfu_aug2.0_73.1_10229.t1 gi|556992572|ref|XP_006000645.1| PREDICTED: homeobox protein Hox-D4-like isoform X1 [Latimeria chalumnae] 8.0e-39
pfu_aug2.0_73.1_10229.t1 gi|556958405|ref|XP_005990110.1| PREDICTED: homeobox protein Hox-B3a-like isoform X1 [Latimeria chalumnae] 4.0e-38

Transcript
Transcript IDpfu_aug2.0_73.1_10229.t1
Definition-
>pfu_aug2.0_73.1_10229.t1
atgcataaaacagcatattataacacaggaccggcgttccagaattattttgtgactgaaaatggttacccatacgattc
tccgtacggtcaggccaatccgggggcggtggacggtagttattaccctcattcatcatgtgcaatgcaaaattcccatc
atcaatcgcaggggacaggtccggattttaatcaccccccatttacgggacctgagggatacggtccaccttgcatacca
accccgaatatttcgtgtggcactggattaaattcaccaaatcctgttgctatcggaaaacagggtgagatatatccgtg
gatgaaggaatctcggcaaaattcaaagcaaagacaagcgcaacatcaacagcaacagcagcaacaaaccgcaacctcgc
aacaacagcagcaatcacagaattcaccgacgcaaggttcccagaacgctagtgagccgacaaagcgagcacgtacagca
tacaccagtgcccaacttgtagagcttgaaaaggaattccacttcaacaggtatctatgccgtccgaggcgtatcgaaat
ggccgctttgctgagtctatccgaaagacaaataaaaatttggttccaaaataggagaatgaaatataagaaagagcaaa
gacaaaaaccgaattcggacaaaaaaggcaaacatgacggaaacctgtctggttcggatacggacagtcaggggtcgctt
tccggtatgaatgatggactcggtagtgattgtggtggaaaattaagtcctgacacaattgaaccatcccataatactca
ttctggaatgataggacttcccggacaacatacgaattctatccaaagatctccacaaatggcgagcccgaatcatctac
agtcggaacagcataatattcggggtcgatatccagataacaaccattactaccatgataatagtccacactccccctct
tttaaaccttctatctcacctaataatgctcatgttaacaataatactatgagtgccaacgaaatgtgtttacagcagaa
ctctatgtctcattcgtacatgcacccgagtcacccggggtctatgtacaatggcgtccattatatgaacaatgcgcata
tgcaagggcctatttatcatgacgtttccggaatggaaccggaaacggaaatgggtgtacacgcaatgccttctggtaca
gtttatccttccggtttaccttgctcatcaagtagtatggggtataacacagggggatttgattatgtaccaaaactaac
tcatttgtag

Protein
Protein IDpfu_aug2.0_73.1_10229.t1
Definition-
>pfu_aug2.0_73.1_10229.t1
MHKTAYYNTGPAFQNYFVTENGYPYDSPYGQANPGAVDGSYYPHSSCAMQNSHHQSQGTGPDFNHPPFTGPEGYGPPCIP
TPNISCGTGLNSPNPVAIGKQGEIYPWMKESRQNSKQRQAQHQQQQQQQTATSQQQQQSQNSPTQGSQNASEPTKRARTA
YTSAQLVELEKEFHFNRYLCRPRRIEMAALLSLSERQIKIWFQNRRMKYKKEQRQKPNSDKKGKHDGNLSGSDTDSQGSL
SGMNDGLGSDCGGKLSPDTIEPSHNTHSGMIGLPGQHTNSIQRSPQMASPNHLQSEQHNIRGRYPDNNHYYHDNSPHSPS
FKPSISPNNAHVNNNTMSANEMCLQQNSMSHSYMHPSHPGSMYNGVHYMNNAHMQGPIYHDVSGMEPETEMGVHAMPSGT
VYPSGLPCSSSSMGYNTGGFDYVPKLTHL

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