Gene
| Gene Model ID | pfu_aug2.0_73.1_10224 |
|---|---|
| Locus | scaffold73.1 : 87222 ... 117889 : + |
| To GenomeBrowser | scaffold73.1:87222..117889 |
| Genes list of scaffold | scaffold73.1 |
| Synonym | NA |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| homeobox protein hox-b5b-like isoform x1 | GO:0003700 GO:0005634 GO:0006355 GO:0007275 GO:0043565 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_73.1_10224.t1 | 1 | 1 | Homeobox | 193 | 249 | 2.5e-23 | 81.4 | 1.2e-26 | 6.0e-23 | 80.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_73.1_10224.t1 | gi|676432028|ref|XP_009046441.1| | hypothetical protein LOTGIDRAFT_86927, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_73.1_10224.t1 | gi|524910323|ref|XP_005110042.1| | PREDICTED: homeobox protein Hox-A4-like, partial [Aplysia californica] | 0.0 |
| pfu_aug2.0_73.1_10224.t1 | gi|742095597|ref|XP_010864363.1| | PREDICTED: homeobox protein Hox-B5b-like isoform X1 [Esox lucius] | 5.00264e-43 |
| pfu_aug2.0_73.1_10224.t1 | gi|597792394|ref|XP_007259185.1| | PREDICTED: homeobox protein Hox-B5b-like isoform X1 [Astyanax mexicanus] | 1.99965e-42 |
| pfu_aug2.0_73.1_10224.t1 | gi|734637039|ref|XP_010747188.1| | PREDICTED: LOW QUALITY PROTEIN: homeobox protein Hox-B5 [Larimichthys crocea] | 3.00004e-41 |
Transcript
| Transcript ID | pfu_aug2.0_73.1_10224.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_73.1_10224.t1 atgagttcgtactttgtaaattccctgtctgcctgctacggacagacgatggggctggagggttgcggtgacgggggttt ccacaggaacgggggataccagcatcctggaggtttataccatagttttgcacgggctggatatccgtatggaacctcga aagaggagaggctagatgaccctgcagattattatggagggcccaggctaagccacctccctccttcaagcccgtgtgcg agtcctcatagcttacataccggttctcaaactcttcaaaatgctcatcctctcagcgaaagatctgcttgtatacggac aaattccaatgggagtaattcatattatccaaatggtcatgtagggagtgtgggggagagaaatcgatctcctccctcac aacaacccccacccacccctccccagtcccagacacagccacagggagggggtacggggtccggaccaacctcgcctcac tccccacgaccctcggagcaggccttccaacaaccccagatctatccctggatgaggaggatgcaatatgcacaagaggg aaatgatggcgaatccaaaaggtcaaggacatcatacactagacaccaaacattggaactagagaaagaatttcattaca acaaatacctcacgcgaaggagacgcattgaaattgcgcatgctctaaacctgactgaaagacaaataaaaatttggttc caaaatagaagaatgaagtggaaaaaggaacataaactttcacatatagctaaaaatatgaacttctgtaatgcgcttga gaaagctgcccaggagcatgcacatgaaaagatggcgctgtga |
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Protein
| Protein ID | pfu_aug2.0_73.1_10224.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_73.1_10224.t1 MSSYFVNSLSACYGQTMGLEGCGDGGFHRNGGYQHPGGLYHSFARAGYPYGTSKEERLDDPADYYGGPRLSHLPPSSPCA SPHSLHTGSQTLQNAHPLSERSACIRTNSNGSNSYYPNGHVGSVGERNRSPPSQQPPPTPPQSQTQPQGGGTGSGPTSPH SPRPSEQAFQQPQIYPWMRRMQYAQEGNDGESKRSRTSYTRHQTLELEKEFHYNKYLTRRRRIEIAHALNLTERQIKIWF QNRRMKWKKEHKLSHIAKNMNFCNALEKAAQEHAHEKMAL |
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