Gene
| Gene Model ID | pfu_aug2.0_695.1_17739 |
|---|---|
| Locus | scaffold695.1 : 178083 ... 189713 : - |
| To GenomeBrowser | scaffold695.1:178083..189713 |
| Genes list of scaffold | scaffold695.1 |
| Synonym | pfu_aug1.0_11593.1_53719 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| glycine receptor subunit alpha-4 | GO:0005886 GO:0006811 GO:0015276 GO:0044425 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_695.1_17739.t1 | 3 | 1 | Neur_chan_LBD | 10 | 107 | 8.5e-36 | 123.1 | 4.2e-21 | 2.1e-17 | 63.0 |
| pfu_aug2.0_695.1_17739.t1 | 3 | 2 | Neur_chan_LBD | 120 | 214 | 8.5e-36 | 123.1 | 4.2e-20 | 2.1e-16 | 59.7 |
| pfu_aug2.0_695.1_17739.t1 | 3 | 3 | Neur_chan_LBD | 247 | 305 | 8.5e-36 | 123.1 | 0.0031 | 15.0 | 4.6 |
| pfu_aug2.0_695.1_17739.t1 | 2 | 1 | Neur_chan_memb | 314 | 395 | 2.7e-35 | 122.3 | 1.4e-34 | 7.1e-31 | 107.9 |
| pfu_aug2.0_695.1_17739.t1 | 2 | 2 | Neur_chan_memb | 454 | 479 | 2.7e-35 | 122.3 | 1.9e-06 | 0.0095 | 15.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_695.1_17739.t1 | gi|260831642|ref|XP_002610767.1| | hypothetical protein BRAFLDRAFT_91559 [Branchiostoma floridae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_695.1_17739.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_695.1_17739.t1 atgctcaatttagagctctattaatttcctaccacggtatattgttcaatctacatcgacagttttgactccatcaacga agcaaacatggactttaccgtcagtatcatgttacacttgagctgggtggacataaggtttaacaactggctgtccaaag atgagaatgagacggtcgagtttgactccacaaggctccacaagctctgggtaccagacctattctttcctaacgagaag aaagccagcgttcataacgtcttcatgccgaacaaaatgttacgagtctacacgggaggcaaagtctcatacacttctag ctgtttgttaccttacttctatgacatcgctttggtagcgatgacgtcagagggtgaaatcgatgacgtaagaggattgt ccttaacattgagctgtcctatgtacctacatgattatccttttgataagcaaacgtgttctttggaaatagaaagcttc agctataatatggacaatatcgttctaaagtggatgaacgacacggaacctgttcaggagaatacaaacattataatgaa ccagttcgaaatcaaaaacaaatctttctctcacagtaccatcaacagaaagggatcagtgtactcagagccaacttcta cctcggtagaaacatcctatattacctggtccagatgtacattccaagcatccttgttgtcatgttgtcatggatatcgt tttggcttaatacgaatgccnaatatggacaatatcgttctaaagtggatgaacgacacggaacctgttcaggagaatac aaacattataatgaaccagttcgaaatcaaaaacaaatctttctctcacagtaccatcaacagaaagggatcagggatgc atagtgtactcagagccaacttctacctcggtagaaacatcctatattacctggtccagatgtacattccaagcatcctt gttgtcatgttgtcatggatatcgttttggcttaatacgaatgccgttcccgggagaatttccctcggtgtgctcactgt cctcacaatgacacagcaaagttcaacggtcaacgcttccctgcctagagtgtcctacaccaaggccatagacatttgga tgtccacgtgtctcgtgtttgtcactaccgccttaattgagtttgctgttgccaactggctgtcgaggaaggacatcaat aagggattcagcttccgaaagctgtttatgataccaaaaccaccaagtaaacgaaaaaggaaaggatcaaaggttttggt ggactctgacggaggaatgaggctggatccagaggcggatccgacataccaggtcagaagaaaatccttaagaggagctg tacatgccatgaacttagacattgcatctaggtttctatttccattcgcttttggaatcttcaacattgtgtattggtct gtgtacctaaaagaaagatcatcttttcaatag |
|
Protein
| Protein ID | pfu_aug2.0_695.1_17739.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_695.1_17739.t1 MLNLELYXFPTTVYCSIYIDSFDSINEANMDFTVSIMLHLSWVDIRFNNWLSKDENETVEFDSTRLHKLWVPDLFFPNEK KASVHNVFMPNKMLRVYTGGKVSYTSSCLLPYFYDIALVAMTSEGEIDDVRGLSLTLSCPMYLHDYPFDKQTCSLEIESF SYNMDNIVLKWMNDTEPVQENTNIIMNQFEIKNKSFSHSTINRKGSVYSEPTSTSVETSYITWSRCTFQASLLSCCHGYR FGLIRMXNMDNIVLKWMNDTEPVQENTNIIMNQFEIKNKSFSHSTINRKGSGMHSVLRANFYLGRNILYYLVQMYIPSIL VVMLSWISFWLNTNAVPGRISLGVLTVLTMTQQSSTVNASLPRVSYTKAIDIWMSTCLVFVTTALIEFAVANWLSRKDIN KGFSFRKLFMIPKPPSKRKRKGSKVLVDSDGGMRLDPEADPTYQVRRKSLRGAVHAMNLDIASRFLFPFAFGIFNIVYWS VYLKERSSFQ |
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