Gene
| Gene Model ID | pfu_aug2.0_690.1_01055 |
|---|---|
| Locus | scaffold690.1 : 188623 ... 193479 : + |
| To GenomeBrowser | scaffold690.1:188623..193479 |
| Genes list of scaffold | scaffold690.1 |
| Synonym | pfu_aug1.0_42188.1_48481 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| tubulin alpha-1a chain-like | GO:0000086 GO:0000226 GO:0003924 GO:0005200 GO:0005525 GO:0005634 GO:0005829 GO:0005881 GO:0019904 GO:0030705 GO:0036464 GO:0051084 GO:0051258 GO:0051301 GO:0055037 GO:0070062 GO:0071353 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_690.1_01055.t1 | 1 | 1 | Tubulin | 11 | 190 | 0.0 | 190.0 | 0.0 | 0.0 | 189.5 |
| pfu_aug2.0_690.1_01055.t1 | 1 | 1 | Tubulin_C | 228 | 357 | 0.0 | 173.3 | 0.0 | 0.0 | 172.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_690.1_01055.t1 | gi|260821662|ref|XP_002606151.1| | hypothetical protein BRAFLDRAFT_115374 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_690.1_01055.t1 | gi|198430425|ref|XP_002129440.1| | PREDICTED: tubulin alpha-1A chain [Ciona intestinalis] | 0.0 |
| pfu_aug2.0_690.1_01055.t1 | gi|260813475|ref|XP_002601443.1| | hypothetical protein BRAFLDRAFT_62062 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_690.1_01055.t1 | gi|291237828|ref|XP_002738831.1| | PREDICTED: tubulin alpha-1A chain-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_690.1_01055.t1 | gi|291231273|ref|XP_002735586.1| | PREDICTED: tubulin alpha-1A chain-like [Saccoglossus kowalevskii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_690.1_01055.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_690.1_01055.t1 atgcccagtgacaagaccattggaggaggtgacgattccttcaacaccttcttcagcgagactggagccggcaaacacgt ccccagggccgtctttgttgacttggaaccaaccgtagtcgatgaggtccgcaccggcacataccgccagctcttccacc ccgagcagctcatcaccggaaaggaagatgccgccaacaactacgcccgtggtcactacaccattggtaaggagatcgtc gaccttgtcctggacagaatcaggaagttggctgaccagtgcacaggtcttcagggtttcttgatcttccactccttcgg tggtggtaccggatccggattcacctccctccttatggaacgtctcagcgttgactacggaaagaaatccaagcttgagt tcgccatctaccccgccccacaggtctccaccgctgtcgttgagccatacaactccatcttgaccacccacaccaccctt gagcactccgactgcgccttcatggtcgacaacgaggctatctacgatatctgcagacgtaacttggacattgaaagacc aacctacaccaacttgaaccgtctgattggtcagattgtcagctccatcactgcctccctccgattcgatggtgccctga acgtcgacttgactgagttccagaccaacttggtaccctacccacgtatccatttccctctggccacatacgccccagtc atctccgccgagaaggcctaccatgagcagctctcagttgctgagatcaccaacgcttgcttcgagccagccaaccagat ggtaaaatgtgacccacgtcacggcaaatacatggcctgctgtatgttgtacagaggagatgttgtccccaaggacgtca acgccgccatcgccaccatcaagaccaagaggaccatccagttcgtcgactggtgtccaactggtttcaaggtcggaatc aactaccagccaccaactgttgtaccaggaggtgatttggccaaggtacagcgtgccgtgtgcatgttgagcaacaccac cgccatcgccgaggcctgggcccgtcttgatcataaattcgatctgatgtacgccaagcgtgctttcgtccactggtacg tcggagagggtatggaagagggagagttctccgaggcccgtgaagatttggccgcccttgagaaggattacgaagaggtc ggagttgactccgtcgagggtgagggtgaagaagagggtgaggaatattaa |
|
Protein
| Protein ID | pfu_aug2.0_690.1_01055.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_690.1_01055.t1 MPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIV DLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTL EHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV ISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGI NYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV GVDSVEGEGEEEGEEY |
|