Gene
| Gene Model ID | pfu_aug2.0_673.1_11074 |
|---|---|
| Locus | scaffold673.1 : 245624 ... 256879 : - |
| To GenomeBrowser | scaffold673.1:245624..256879 |
| Genes list of scaffold | scaffold673.1 |
| Synonym | pfu_aug1.0_14535.1_61376 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| dna polymerase epsilon subunit 3 | GO:0005671 GO:0008622 GO:0043565 GO:0043966 GO:0046982 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_673.1_11074.t1 | 2 | 1 | CBFD_NFYB_HMF | 9 | 73 | 1.7e-13 | 50.4 | 2.8e-16 | 1.7e-13 | 50.4 |
| pfu_aug2.0_673.1_11074.t1 | 2 | 2 | CBFD_NFYB_HMF | 97 | 108 | 1.7e-13 | 50.4 | 8.3 | 4900.0 | -2.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_673.1_11074.t1 | gi|676440128|ref|XP_009049074.1| | hypothetical protein LOTGIDRAFT_238643 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_673.1_11074.t1 | gi|507558078|ref|XP_004662777.1| | PREDICTED: DNA polymerase epsilon subunit 3 [Jaculus jaculus] | 0.0 |
| pfu_aug2.0_673.1_11074.t1 | gi|524950315|ref|XP_005075173.1| | PREDICTED: DNA polymerase epsilon subunit 3 [Mesocricetus auratus] | 0.0 |
| pfu_aug2.0_673.1_11074.t1 | gi|558202687|ref|XP_006131890.1| | PREDICTED: DNA polymerase epsilon subunit 3 isoform X1 [Pelodiscus sinensis] | 0.0 |
| pfu_aug2.0_673.1_11074.t1 | gi|226443135|ref|NP_001140051.1| | DNA-directed DNA polymerase epsilon 3 [Salmo salar] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_673.1_11074.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_673.1_11074.t1 atggcggaacgtccagaagatctaaaccttccaaatgctgtagtgacacgcattataaaggatgctatacctgaaaatgt caatatttcaaaagaagcaaggcttgccatatctaaagcagctagtgttttcgttttgtatgccacttcgtgttcaaata acttcgctgtgaaaagtaaaaggaaaaccataaatgctcaggatgtcattaatgctatggaggacatggaatttgaacag tttatggaacctctaaagaaatgtttagaagcttatcgaaatgaacagaagagtaagaaggaggctaatgaaagaaagaa gaaagaaaaggaggaacaagctgtagtggtagaagaggaagtggaagaaatggagaacgaagatgctgaagaaaatgaca atgaaaaagatacagactatgtacaagatgagggtgatgatgatgatgatgacgatgaatctgtgggggagtctggggga ggggggagtgtagtaaatggaggtatagagagtaaccccgctagtgtaacaggtagtgtggtggaaatatcagatgatga ctga |
|
Protein
| Protein ID | pfu_aug2.0_673.1_11074.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_673.1_11074.t1 MAERPEDLNLPNAVVTRIIKDAIPENVNISKEARLAISKAASVFVLYATSCSNNFAVKSKRKTINAQDVINAMEDMEFEQ FMEPLKKCLEAYRNEQKSKKEANERKKKEKEEQAVVVEEEVEEMENEDAEENDNEKDTDYVQDEGDDDDDDDESVGESGG GGSVVNGGIESNPASVTGSVVEISDDD |
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