Gene
| Gene Model ID | pfu_aug2.0_673.1_11073 |
|---|---|
| Locus | scaffold673.1 : 239180 ... 243144 : + |
| To GenomeBrowser | scaffold673.1:239180..243144 |
| Genes list of scaffold | scaffold673.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_673.1_11073.t1 | 6 | 1 | LRR_4 | 21 | 45 | 2.3e-10 | 39.8 | 1.2 | 3600.0 | -2.3 |
| pfu_aug2.0_673.1_11073.t1 | 6 | 2 | LRR_4 | 114 | 153 | 2.3e-10 | 39.8 | 4.9e-06 | 0.015 | 14.9 |
| pfu_aug2.0_673.1_11073.t1 | 6 | 1 | LRR_1 | 115 | 127 | 5.5e-06 | 25.6 | 0.79 | 2300.0 | -0.6 |
| pfu_aug2.0_673.1_11073.t1 | 5 | 1 | LRR_8 | 136 | 185 | 9.7e-07 | 28.4 | 5.4e-08 | 0.00016 | 21.3 |
| pfu_aug2.0_673.1_11073.t1 | 6 | 2 | LRR_1 | 142 | 153 | 5.5e-06 | 25.6 | 0.011 | 32.0 | 5.1 |
| pfu_aug2.0_673.1_11073.t1 | 6 | 3 | LRR_4 | 166 | 186 | 2.3e-10 | 39.8 | 1.4e-06 | 0.0042 | 16.6 |
| pfu_aug2.0_673.1_11073.t1 | 6 | 4 | LRR_4 | 173 | 217 | 2.3e-10 | 39.8 | 4.0e-08 | 0.00012 | 21.6 |
| pfu_aug2.0_673.1_11073.t1 | 5 | 2 | LRR_8 | 174 | 236 | 9.7e-07 | 28.4 | 2.4e-07 | 0.00072 | 19.2 |
| pfu_aug2.0_673.1_11073.t1 | 6 | 3 | LRR_1 | 174 | 187 | 5.5e-06 | 25.6 | 5.3e-05 | 0.16 | 12.1 |
| pfu_aug2.0_673.1_11073.t1 | 6 | 5 | LRR_4 | 200 | 236 | 2.3e-10 | 39.8 | 0.0042 | 12.0 | 5.6 |
| pfu_aug2.0_673.1_11073.t1 | 5 | 3 | LRR_8 | 200 | 237 | 9.7e-07 | 28.4 | 0.0004 | 1.2 | 8.9 |
| pfu_aug2.0_673.1_11073.t1 | 6 | 4 | LRR_1 | 200 | 213 | 5.5e-06 | 25.6 | 0.034 | 100.0 | 3.5 |
| pfu_aug2.0_673.1_11073.t1 | 6 | 6 | LRR_4 | 227 | 237 | 2.3e-10 | 39.8 | 0.023 | 69.0 | 3.2 |
| pfu_aug2.0_673.1_11073.t1 | 6 | 5 | LRR_1 | 227 | 238 | 5.5e-06 | 25.6 | 0.0062 | 18.0 | 5.8 |
| pfu_aug2.0_673.1_11073.t1 | 5 | 4 | LRR_8 | 253 | 283 | 9.7e-07 | 28.4 | 0.042 | 130.0 | 2.4 |
| pfu_aug2.0_673.1_11073.t1 | 6 | 6 | LRR_1 | 254 | 282 | 5.5e-06 | 25.6 | 0.11 | 330.0 | 1.9 |
| pfu_aug2.0_673.1_11073.t1 | 5 | 5 | LRR_8 | 280 | 294 | 9.7e-07 | 28.4 | 0.093 | 280.0 | 1.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_673.1_11073.t1 | gi|524871310|ref|XP_005092428.1| | PREDICTED: leucine-rich repeat-containing protein 14B-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_673.1_11073.t1 | gi|676428384|ref|XP_009045258.1| | hypothetical protein LOTGIDRAFT_230103 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_673.1_11073.t1 | gi|564256867|ref|XP_006267396.1| | PREDICTED: leucine-rich repeat-containing protein 14 [Alligator mississippiensis] | 2.0e-14 |
| pfu_aug2.0_673.1_11073.t1 | gi|677608498|ref|XP_009068205.1| | PREDICTED: leucine-rich repeat-containing protein 14 [Acanthisitta chloris] | 3.0e-14 |
| pfu_aug2.0_673.1_11073.t1 | gi|557328797|ref|XP_006037320.1| | PREDICTED: leucine-rich repeat-containing protein 14 [Alligator sinensis] | 4.0e-14 |
Transcript
| Transcript ID | pfu_aug2.0_673.1_11073.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_673.1_11073.t1 atgacaaactacctagccagtcagaccatgttactgtacagtgagatccgacaaagcacaacagtggacctgtataacag tgctgtaacggctatgaagagacttctgggaagcacagacctacagacaatcgatgctggtgtctccttgcctgataata catatactgtaaagctggatagctgtataacatcagaagatacatttacggagctctgtaaggcgttgaaggtctcccga tttgagggggagaaactctcactgctgatcgataaaatagacgccacatgtatcggacaagcaggactggttttactgct gaaacaagtcatctgtgagaatataacaggattgcgtctgaagtataattctcttcattgcgatgactttggtaaacttg ctccctatattagcaagctgacaaacttgacagctctggacctttcctgcaatgccatacatctgtatcaggatgattcg tgttgcgattccatgggagaggtgctgtcatgcttgactaaactcgagagacttgatctcagcaacaacagaatcaagac gaggctgcgtcgagttatacaaggcattacaaatcctctgaaatatctacgtttggtgggttgtggtttgacgtttacgg acattacatatctcacaatctcacatcactgccgcggactgagggagcttgatttaagtgaaaacacattaggtcctcat cacagggcagtgggtcagctgttacagaatgccggcaacaatctattggcgcttgatttagaagattgtgctttcagaga tgaacatatgagctatctattgaaagattttccttgtttacagtcattgttgtacctaaatatagcacagcatttcctga ctgaaacaaccatttttgatgtaataagcaaattctctaagttaaattcaagtgttgcgttgaagataccatacccacct gaatactttatctttgaatctcagtcaatggaggaattgaacaggtataaggcacgggcatatcttgacatgttacatgc agctaacataacaagaccagataatagacaaccattgaaagtttatcctaaacaatcggagtttcatgcaacttatttat aa |
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Protein
| Protein ID | pfu_aug2.0_673.1_11073.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_673.1_11073.t1 MTNYLASQTMLLYSEIRQSTTVDLYNSAVTAMKRLLGSTDLQTIDAGVSLPDNTYTVKLDSCITSEDTFTELCKALKVSR FEGEKLSLLIDKIDATCIGQAGLVLLLKQVICENITGLRLKYNSLHCDDFGKLAPYISKLTNLTALDLSCNAIHLYQDDS CCDSMGEVLSCLTKLERLDLSNNRIKTRLRRVIQGITNPLKYLRLVGCGLTFTDITYLTISHHCRGLRELDLSENTLGPH HRAVGQLLQNAGNNLLALDLEDCAFRDEHMSYLLKDFPCLQSLLYLNIAQHFLTETTIFDVISKFSKLNSSVALKIPYPP EYFIFESQSMEELNRYKARAYLDMLHAANITRPDNRQPLKVYPKQSEFHATYL |
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