Gene
| Gene Model ID | pfu_aug2.0_612.1_07723 |
|---|---|
| Locus | scaffold612.1 : 119806 ... 135015 : + |
| To GenomeBrowser | scaffold612.1:119806..135015 |
| Genes list of scaffold | scaffold612.1 |
| Synonym | pfu_aug1.0_376.1_07497 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_612.1_07723.t1 | 4 | 1 | Sushi | 33 | 84 | 1.5e-20 | 73.3 | 2.4e-05 | 0.12 | 12.7 |
| pfu_aug2.0_612.1_07723.t1 | 4 | 2 | Sushi | 92 | 141 | 1.5e-20 | 73.3 | 6.2e-08 | 0.00031 | 21.0 |
| pfu_aug2.0_612.1_07723.t1 | 4 | 3 | Sushi | 149 | 199 | 1.5e-20 | 73.3 | 1.3e-10 | 6.4e-07 | 29.6 |
| pfu_aug2.0_612.1_07723.t1 | 4 | 4 | Sushi | 208 | 258 | 1.5e-20 | 73.3 | 4.5e-09 | 2.2e-05 | 24.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_612.1_07723.t1 | gi|564242614|ref|XP_006278103.1| | PREDICTED: sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1-like [Alligator mississippiensis] | 1.0e-21 |
| pfu_aug2.0_612.1_07723.t1 | gi|557290339|ref|XP_006027773.1| | PREDICTED: sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 [Alligator sinensis] | 2.0e-21 |
| pfu_aug2.0_612.1_07723.t1 | gi|699638923|ref|XP_009894181.1| | PREDICTED: sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 [Charadrius vociferus] | 3.0e-19 |
Transcript
| Transcript ID | pfu_aug2.0_612.1_07723.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_612.1_07723.t1 atgaacacgagtgggagatgtggcgatacagactgtaatgaacaccacacgtgtataactattctgagtaatgaaaagta ctgtattagaacagcatgttctgatccagtagttccgcatggtatatttgcaaatggttctaacactgtgagcggtgtcc gggaggcaacgtgtagtacgtactatgagtttaatggaggtgcatctatggacgttacaacatgtggtgccggaggacat tgggataaggcattgatgtgtcaattaaaagaatgccctgaaccctctgcaccacaatatggtacagtgctgagtggtaa tagttcgatagggtcttccagagaaatagaatgcaccactggatatgcaaaacttggtgccgaatctgggattatttgtc agcatgatcagacgtggacaacatggacgggcacctgttccacgtgtagcaatccaagtgctatttccagtgcttacatt ggatccggtacagtcaccatggggtcccagcgaacttattattgtaatacgggttatcagagtaacgggtattctgctac aatcacatgtcagagcgatgctacatggacgtcgacatcttttggatgtaatctcaaagattgtggatcaccacctagtg tatctctggcagcagcctcttactcggctacgacatacggtgcttccgtcacctacacttgtaactatggttacattggt aatggcggaagtctttcgatattctgccagtcatcggctgtctggtcggctgttcagttttcttgcatcaggccttcgac tgcaacttttgacttcgagggttttgacacctatagcatggaagactatggtgcagcttattcatggactaggcaatcat tggtattccaagcgacaaagggaggttcttcttccagcgactggggcggtgacattgctgttgacctcatacaagtaaag accagctgctaa |
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Protein
| Protein ID | pfu_aug2.0_612.1_07723.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_612.1_07723.t1 MNTSGRCGDTDCNEHHTCITILSNEKYCIRTACSDPVVPHGIFANGSNTVSGVREATCSTYYEFNGGASMDVTTCGAGGH WDKALMCQLKECPEPSAPQYGTVLSGNSSIGSSREIECTTGYAKLGAESGIICQHDQTWTTWTGTCSTCSNPSAISSAYI GSGTVTMGSQRTYYCNTGYQSNGYSATITCQSDATWTSTSFGCNLKDCGSPPSVSLAAASYSATTYGASVTYTCNYGYIG NGGSLSIFCQSSAVWSAVQFSCIRPSTATFDFEGFDTYSMEDYGAAYSWTRQSLVFQATKGGSSSSDWGGDIAVDLIQVK TSC |
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