Gene
| Gene Model ID | pfu_aug2.0_612.1_07722 |
|---|---|
| Locus | scaffold612.1 : 72836 ... 105575 : + |
| To GenomeBrowser | scaffold612.1:72836..105575 |
| Genes list of scaffold | scaffold612.1 |
| Synonym | pfu_aug1.0_376.1_07499 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_612.1_07722.t1 | 1 | 1 | PAN_1 | 4 | 51 | 6.5e-06 | 25.8 | 4.1e-09 | 2.0e-05 | 24.2 |
| pfu_aug2.0_612.1_07722.t1 | 5 | 1 | Sushi | 6 | 35 | 8.9e-16 | 57.9 | 0.63 | 3100.0 | -1.4 |
| pfu_aug2.0_612.1_07722.t1 | 2 | 1 | MAM | 41 | 96 | 1.3e-10 | 41.2 | 1.1 | 5500.0 | -3.1 |
| pfu_aug2.0_612.1_07722.t1 | 5 | 2 | Sushi | 70 | 102 | 8.9e-16 | 57.9 | 1.1e-06 | 0.0054 | 17.0 |
| pfu_aug2.0_612.1_07722.t1 | 5 | 3 | Sushi | 107 | 156 | 8.9e-16 | 57.9 | 2.5e-06 | 0.013 | 15.8 |
| pfu_aug2.0_612.1_07722.t1 | 5 | 4 | Sushi | 164 | 214 | 8.9e-16 | 57.9 | 4.1e-09 | 2.0e-05 | 24.8 |
| pfu_aug2.0_612.1_07722.t1 | 5 | 5 | Sushi | 223 | 276 | 8.9e-16 | 57.9 | 1.3e-07 | 0.00065 | 19.9 |
| pfu_aug2.0_612.1_07722.t1 | 2 | 2 | MAM | 305 | 404 | 1.3e-10 | 41.2 | 4.4e-14 | 2.2e-10 | 40.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_612.1_07722.t1 | gi|395515037|ref|XP_003761714.1| | 2.0e-23 | |
| pfu_aug2.0_612.1_07722.t1 | gi|612037843|ref|XP_007498660.1| | PREDICTED: sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 isoform X2 [Monodelphis domestica] | 2.0e-23 |
| pfu_aug2.0_612.1_07722.t1 | gi|126334857|ref|XP_001374633.1| | PREDICTED: sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 isoform X1 [Monodelphis domestica] | 2.0e-23 |
| pfu_aug2.0_612.1_07722.t1 | gi|620948150|ref|XP_007653845.1| | PREDICTED: sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 [Ornithorhynchus anatinus] | 3.0e-22 |
| pfu_aug2.0_612.1_07722.t1 | gi|478498911|ref|XP_004423786.1| | PREDICTED: sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 [Ceratotherium simum simum] | 7.0e-22 |
Transcript
| Transcript ID | pfu_aug2.0_612.1_07722.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_612.1_07722.t1 atgggacctaaaatgtgcatgtttgcttgtcaaaagaacaaggattgtatgtccattaaccatcataaggatacactgga ctgtcaattattttcctggaattccatgaatatcagccaatttgaaacaaaagacaactgcacacactacagctcccaag atgatcctctggattccgccggtatgaattctgctgggagctggagatccttgacgtgtgataatggatacgagctaagt tatgaagtgacgtcacaattcatgatatgtaagtctaacggagaatggaatggcacgactaactgcacgagaaaaaaatg tcctgaaccttcagcgccaagtaatgtgatcatatttcccggagagaacgtcatcggatccacacgtaacgttcaatgta acattgggtatctcaatgtaggtgttcccattacaattgaatgcttcgagaacagagcatggaccaactggactggctct tgtaagacatgcgatgaaccttacaacattacaaatgctgttatcagtgacggaaacgtaacagtaggaagtaacagggc gtatacctgtaacaccggtttcgaagacaacggggaatcccccttaattacatgcaatgaatctgccatgtggacctcga cgttgttttcttgcacaatagttgattgtgggcctccgcctaatattccaaggacaaatagaggcagtactggcacaaca tatatggcctatgctatttacttctgtatatataacctttcagtgaaaggaaataataaaatcatctgcaatgcaaccgg aaagtggtctactccgaatttcaattgtacggcaccttcaacagccattatagattttgaggatggagatctcttcaaaa tggaccacgtatatggatatattatgtttgatacaatagaaggacccacacctacaccgaacaccgggccaaatagatca tatcatggtaaaaaatacagattttatgagtccagtagtcatagccctagctcaccattaaagatggactcaatcgacta tttcagtgccgatgttaagtgtatagaattctactacagtatgtatggggcaacctgtggcacactaacactcaaatacc aatatcttcaatcaactccggagtataccttatggagttctactggcgataaaggtgaaccaacctggttcaatgctaaa gtcactgtcaatatggcggtcagatga |
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Protein
| Protein ID | pfu_aug2.0_612.1_07722.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_612.1_07722.t1 MGPKMCMFACQKNKDCMSINHHKDTLDCQLFSWNSMNISQFETKDNCTHYSSQDDPLDSAGMNSAGSWRSLTCDNGYELS YEVTSQFMICKSNGEWNGTTNCTRKKCPEPSAPSNVIIFPGENVIGSTRNVQCNIGYLNVGVPITIECFENRAWTNWTGS CKTCDEPYNITNAVISDGNVTVGSNRAYTCNTGFEDNGESPLITCNESAMWTSTLFSCTIVDCGPPPNIPRTNRGSTGTT YMAYAIYFCIYNLSVKGNNKIICNATGKWSTPNFNCTAPSTAIIDFEDGDLFKMDHVYGYIMFDTIEGPTPTPNTGPNRS YHGKKYRFYESSSHSPSSPLKMDSIDYFSADVKCIEFYYSMYGATCGTLTLKYQYLQSTPEYTLWSSTGDKGEPTWFNAK VTVNMAVR |
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