Gene
| Gene Model ID | pfu_aug2.0_6075.1_19488 |
|---|---|
| Locus | scaffold6075.1 : 11553 ... 20665 : - |
| To GenomeBrowser | scaffold6075.1:11553..20665 |
| Genes list of scaffold | scaffold6075.1 |
| Synonym | pfu_aug1.0_2036.1_51491 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| ras-related protein rab-40c-like | GO:0005525 GO:0007264 GO:0015031 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_6075.1_19488.t1 | 1 | 1 | Ras | 25 | 182 | 1.7e-25 | 89.2 | 1.4e-28 | 6.7e-25 | 87.3 |
| pfu_aug2.0_6075.1_19488.t1 | 2 | 1 | Miro | 25 | 136 | 6.3e-08 | 33.1 | 3.3e-11 | 1.7e-07 | 31.7 |
| pfu_aug2.0_6075.1_19488.t1 | 2 | 1 | SOCS_box | 76 | 84 | 1.8e-06 | 27.6 | 1.2 | 5800.0 | -2.8 |
| pfu_aug2.0_6075.1_19488.t1 | 2 | 2 | Miro | 168 | 184 | 6.3e-08 | 33.1 | 1.2 | 6100.0 | -2.4 |
| pfu_aug2.0_6075.1_19488.t1 | 2 | 2 | SOCS_box | 197 | 233 | 1.8e-06 | 27.6 | 6.1e-10 | 3.0e-06 | 26.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_6075.1_19488.t1 | gi|676428387|ref|XP_009045259.1| | hypothetical protein LOTGIDRAFT_211895 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_6075.1_19488.t1 | gi|524872316|ref|XP_005092921.1| | PREDICTED: ras-related protein Rab-40C-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_6075.1_19488.t1 | gi|752860606|ref|XP_011252785.1| | PREDICTED: ras-related protein Rab-40C [Camponotus floridanus] | 0.0 |
| pfu_aug2.0_6075.1_19488.t1 | gi|759036083|ref|XP_011342771.1| | PREDICTED: ras-related protein Rab-40C [Cerapachys biroi] | 0.0 |
| pfu_aug2.0_6075.1_19488.t1 | gi|751199500|ref|XP_011156894.1| | PREDICTED: ras-related protein Rab-40B [Solenopsis invicta] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_6075.1_19488.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_6075.1_19488.t1 atgatggccgttgataggtccccaagcatcaatattggatcaagtacaccgaaaccctatgattttcttttgaaattttt attggttggtgatagcgatgtaggcaaagaggaattgttaagtggcatggatgatggtgccactgaatcaccatatggat tcagcagttgcggtattgattataagaccacaactatattgttagatggcaaaagagtgaaacttcagttatgtcattta gtcatactttcagtttccagcttgtctctaatccaaaccaaattgaatggaatcctactggtgtacgatatcaccaacaa gtggtcatttgacggcattgagcgatggatcaaagaaattgacgagcatgcacctggtgttcccaagattttggtcggca atcgtttacatatggcgtataagagacaagttagtgaacaaactgcagaatcgtacgccctgaagaatgatatggcattt tttgaagtgagcccattatgtgactttaatgtgactgaatcgtttgcggagctttctcgagtcgctctaaaacggaatgg catgaggaggacatggggcccaaataaagtgctaagcctacaggaaatagcttgtcgatgtatagtggcaaacacaacca tatacggcattgaccacttaccgcttccaatggccctgaaatctcatctcaagtcctacgccctgaccaacaaaaccaga gtcaggatgcagagcttcatgcataaaaaatccaagtatctgaacccctccgactcaccacctgccaattgccgccgtag ctgcagtattagctag |
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Protein
| Protein ID | pfu_aug2.0_6075.1_19488.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_6075.1_19488.t1 MMAVDRSPSINIGSSTPKPYDFLLKFLLVGDSDVGKEELLSGMDDGATESPYGFSSCGIDYKTTTILLDGKRVKLQLCHL VILSVSSLSLIQTKLNGILLVYDITNKWSFDGIERWIKEIDEHAPGVPKILVGNRLHMAYKRQVSEQTAESYALKNDMAF FEVSPLCDFNVTESFAELSRVALKRNGMRRTWGPNKVLSLQEIACRCIVANTTIYGIDHLPLPMALKSHLKSYALTNKTR VRMQSFMHKKSKYLNPSDSPPANCRRSCSIS |
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