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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_60.1_00164
Locus scaffold60.1 : 508847 ... 514373 : -
To GenomeBrowser scaffold60.1:508847..514373
Genes list of scaffold scaffold60.1
Synonym pfu_aug1.0_1324.1_58439

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_60.1_00164.t1 1 1 adh_short 7 168 6.4e-28 97.7 3.4e-31 1.0e-27 97.0
pfu_aug2.0_60.1_00164.t1 1 1 KR 7 170 4.7e-10 39.4 2.3e-13 6.9e-10 38.8
pfu_aug2.0_60.1_00164.t1 1 1 adh_short_C2 10 237 8.8e-20 71.4 7.8e-23 2.3e-19 70.1

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_60.1_00164.t1 gi|114050773|ref|NP_001040155.1| short-chain dehydrogenease/reductase-like [Bombyx mori] 0.0
pfu_aug2.0_60.1_00164.t1 gi|751223554|ref|XP_011165069.1| PREDICTED: dehydrogenase/reductase SDR family member 4-like [Solenopsis invicta] 0.0

Transcript
Transcript IDpfu_aug2.0_60.1_00164.t1
Definition-
>pfu_aug2.0_60.1_00164.t1
atgaaccaaattcgtgcaacaggagcaagttcgggacttggtgaagccattgcctaccactttgccaagaatgggtacaa
actatcattgattggacggagtaaagagaacttagaaatagttgtagagaaatgccgaggctttggacttgcgaaagaaa
aggttatatacttaacgggagatattactgatggatctaccaggaaatacctcatagataacacaatgtcctcttttgga
aggatcgacgtcctcatcaacaacgccggtgtgctgacagtggggatgtacagtgatactagtgagagtgaataccgacg
tgtcatagaaacaaaccaaacatcaccttatcttcttactcaactcgctataccacatctcaagcagagcaaaggaaata
ttgttaacgtatccagtatatgctcccacagagtgacgaacttaggattatcagcgtattcgatgtctaaagctgcgatg
aacatgtatacccagtacctcgcattaggtgcagttccaacaagtcttgggagaaacaaagatgggactgtgacaggacc
agaacattggaatgctcgtatggctagaacagcccagctgacacctcttgcgcggaacggtacaccagaggaaatagcag
aggtcgtgggattcatagcatctgataaagctgcctatatgactggggaaaatctggttatagatggaggacgtcagtgc
atgtgtaactttctgtatgcagacaggaaatga

Protein
Protein IDpfu_aug2.0_60.1_00164.t1
Definition-
>pfu_aug2.0_60.1_00164.t1
MNQIRATGASSGLGEAIAYHFAKNGYKLSLIGRSKENLEIVVEKCRGFGLAKEKVIYLTGDITDGSTRKYLIDNTMSSFG
RIDVLINNAGVLTVGMYSDTSESEYRRVIETNQTSPYLLTQLAIPHLKQSKGNIVNVSSICSHRVTNLGLSAYSMSKAAM
NMYTQYLALGAVPTSLGRNKDGTVTGPEHWNARMARTAQLTPLARNGTPEEIAEVVGFIASDKAAYMTGENLVIDGGRQC
MCNFLYADRK

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