Gene
| Gene Model ID | pfu_aug2.0_60.1_00154 |
|---|---|
| Locus | scaffold60.1 : 252690 ... 270011 : + |
| To GenomeBrowser | scaffold60.1:252690..270011 |
| Genes list of scaffold | scaffold60.1 |
| Synonym | pfu_aug1.0_3060.1_44568 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| mrna turnover protein 4 homolog | GO:0005730 GO:0005840 GO:0031965 GO:0042254 GO:0044822 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_60.1_00154.t1 | 1 | 1 | Ribosomal_L10 | 21 | 119 | 6.2e-22 | 77.4 | 1.2e-25 | 9.3e-22 | 76.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_60.1_00154.t1 | gi|676476427|ref|XP_009060789.1| | hypothetical protein LOTGIDRAFT_145862 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_60.1_00154.t1 | gi|524909008|ref|XP_005109590.1| | PREDICTED: mRNA turnover protein 4 homolog [Aplysia californica] | 0.0 |
| pfu_aug2.0_60.1_00154.t1 | gi|676451375|ref|XP_009052685.1| | hypothetical protein LOTGIDRAFT_56656, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_60.1_00154.t1 | gi|260790436|ref|XP_002590248.1| | hypothetical protein BRAFLDRAFT_254316 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_60.1_00154.t1 | gi|759198385|ref|XP_011385484.1| | PREDICTED: mRNA turnover protein 4 homolog [Pteropus vampyrus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_60.1_00154.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_60.1_00154.t1 atgccgaagtctaaaagagacaagaaaatttctttgacgcagacaaagaagaaaggattagaactaaaacagaaacttat tgaggatattcagcaatgtgcagacaaatacaagaggatttttacattttccgtgcacaacatgagaaacattcagttga agcaagttcgtcaggaatggaagcacagcaggtttttctttggtaagaataaagtgatgtgccttgccctgggtagaacg gacggtgaggagtacaaggacaacctacacaagctcagcagtcagctccgagggcagactggacttctgttcactaacaa atcaaaggaggaggttctaaagttctttgatgctttttctgtatcggactatgccagatctggcaatgaagctccacaga cagttattctagaagctggacctgttccagaattctctcattcgatggagccacagttacgacagcttggtctacccaca agtcttcaaaagggtgtgattacattactgagagaacatactgtgtgtgaacaaggagatattttgacccccgagcaagc caggatattgaaattatttggacatgaaatgtcggaattcagaataacaatagaaggagtgtggtccgatggcaactggg agatcctggatgaccggccattacctataacaccaactaaagtcaaagtcaaagctaaagtgaaaaaagatgaattggaa gaggaagatgaagatgtacaagaggagatcatggatgatgatgaagatgatgaagatgatacttga |
|
Protein
| Protein ID | pfu_aug2.0_60.1_00154.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_60.1_00154.t1 MPKSKRDKKISLTQTKKKGLELKQKLIEDIQQCADKYKRIFTFSVHNMRNIQLKQVRQEWKHSRFFFGKNKVMCLALGRT DGEEYKDNLHKLSSQLRGQTGLLFTNKSKEEVLKFFDAFSVSDYARSGNEAPQTVILEAGPVPEFSHSMEPQLRQLGLPT SLQKGVITLLREHTVCEQGDILTPEQARILKLFGHEMSEFRITIEGVWSDGNWEILDDRPLPITPTKVKVKAKVKKDELE EEDEDVQEEIMDDDEDDEDDT |
|