Gene
| Gene Model ID | pfu_aug2.0_60.1_00150 |
|---|---|
| Locus | scaffold60.1 : 131277 ... 156925 : - |
| To GenomeBrowser | scaffold60.1:131277..156925 |
| Genes list of scaffold | scaffold60.1 |
| Synonym | pfu_aug1.0_2609.1_37332 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| atp-dependent rna helicase ddx54-like | GO:0097159 GO:1901363 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_60.1_00150.t1 | 1 | 1 | DEAD | 132 | 319 | 1.7e-38 | 131.7 | 2.29995e-41 | 5.7e-38 | 130.0 |
| pfu_aug2.0_60.1_00150.t1 | 2 | 1 | Helicase_C | 338 | 412 | 4.3e-19 | 68.1 | 8.7e-22 | 2.1e-18 | 65.9 |
| pfu_aug2.0_60.1_00150.t1 | 2 | 2 | Helicase_C | 450 | 457 | 4.3e-19 | 68.1 | 3.5 | 8800.0 | -3.4 |
| pfu_aug2.0_60.1_00150.t1 | 3 | 1 | DBP10CT | 690 | 705 | 3.8e-15 | 55.4 | 3.5 | 8600.0 | -3.4 |
| pfu_aug2.0_60.1_00150.t1 | 3 | 2 | DBP10CT | 909 | 924 | 3.8e-15 | 55.4 | 2.5 | 6100.0 | -2.9 |
| pfu_aug2.0_60.1_00150.t1 | 3 | 3 | DBP10CT | 1001 | 1052 | 3.8e-15 | 55.4 | 1.6e-18 | 3.8e-15 | 55.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_60.1_00150.t1 | gi|410904152|ref|XP_003965556.1| | PREDICTED: ATP-dependent RNA helicase DDX54 [Takifugu rubripes] | 0.0 |
| pfu_aug2.0_60.1_00150.t1 | gi|301609527|ref|XP_002934380.1| | PREDICTED: ATP-dependent RNA helicase DDX54 [Xenopus (Silurana) tropicalis] | 0.0 |
| pfu_aug2.0_60.1_00150.t1 | gi|632968403|ref|XP_007900507.1| | PREDICTED: ATP-dependent RNA helicase DDX54 isoform X1 [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_60.1_00150.t1 | gi|62740160|gb|AAH94142.1| | LOC495097 protein, partial [Xenopus laevis] | 0.0 |
| pfu_aug2.0_60.1_00150.t1 | gi|54038020|gb|AAH84268.1| | LOC495097 protein, partial [Xenopus laevis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_60.1_00150.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_60.1_00150.t1 atgggtaaattgaaaaaagttcagaaaaaacatatacagaacaaacagaaaaaatctcgaaatttgaaggagaaaagcac catcataaatggtacaagaagttctgcaaagtcctcgcgctcacatagccatccaaagaaaaggagccacaacaataagc cagagacaaacgattctgatattgaagtgatgaagagtaataatgacgttaagaagcttgccgatcaatctgagagtgag gaagatagtgattctgataaggaatacagagacacacgacaatgggtcacacaacagaacaggaaaaagaaaaagtcagg aggattccagtctatgggtagtctttcacaccatgtgtataaaggcataatcaggaaaggctataaaattcccacaccga tacagagaaagaccatcccaattatcttagatggcaaagatgtggttgccatggcaaggacaggaagtggtaaaacggca gcttttctgatcccaatgtttgagaggttgaagtcccacacaggcgtggccggagcccgagcattagtcttgtcacctac cagggaactggctctacagactctcaaattcacaaaggagatagggaaatacctcaatcttagggcagctgttatattag gtggagataaaatggatgaccagtttgcagctttgcatgaaaatccagatatcatcatcgccacacccggccgtttgtta cacgtactaatggagatggacctcaaactgaaatgtgtggagtatgtggtatttgacgaggcagacagaaaagtagataa tgtaatcatgcaaaaagnagaaactaaactcagtgatctactcaagatgtcgtttttccattgccgtgaagatgacaagg tggctgttctactttatctattgaagaatttgataaaccctgaggatcagactgtggtgttcgctgctaccaaacatcat gtagaatatatcaacatgatgtctgactacgatgttttcctctctagtgaagaaatgagaggtattagcagtacgtacat ctatagctccttggaccaggctgctagaaaaataaacgtggccaaattccagcataaaaaggtcaaggtcatgatagtaa ctgaccttgcagcacgtggtatagatattcctctcctggacaatgttatcaactataacttccctgcaaaggcaaaattg tttgtacatagagttggtagagttgcccgtgctggtcgatcaggtacagctttcactatgctatctgtagaagaaatgcc gttcttactggatttgtacgtcttccttggaaggaatctcaaatttgtgtcctcagaaaaaaaggttgaaggtagagttg cccgtgctggtcgatcaggtacagctttcactatgctgtctgtagaagagatgccattcttactggatttgtacgtcttc cttggaaggaatctcaaatttgtgtcctcagaaaaaaaggttgaagatgaggatggtttatgtggggaggaatctacata tctatttatagaacattatgttacagatgaggatggtttatgtggagagatacctcaaacagttatagatgatatggagg aacagctaaggttatggcatgcagactccgctgaactggttggtatgaagaaagtgtgtgttaatgccatgaagaaatat gtcaagtcccgcccagcacctgcaccagaatctataaaacgcttcaaggagatgaaccagaatggaattacaatgggcat ccatcctttatttatattagcgggtggtgatgaggaacaggagaggcagtccctactgaaggctctaaaatcctacaaag ccaataataccatctttgaagtgaacacaacagcaaaaacacaggcatttgacattatgaagaagaaaagaaggtggcac caggacgttatcgagaaacggcaccagaactatgaggatcatctagctagtcagaaaccacaggatgaggatcggcctga aacgaccctcaataccgcagatgaaaatgatctcaagaatgccttcagtgttgtgatagggtcaaagaggaaacatcagc agtttgtgtttgagccaaagaaaaagaagaaaatttcaacaagggatgaagaaaacttccttcattacagaccaaaagac tttcagtccgagagaggtctttccctatatttataccccnttgttacagatgaggatggtctatgtggagagatacctca gacagttatagatgatatggaggaacagctaaggttatggcacgcagactccgctgaactggttggtatgaagaaagtgt gtgttaatgccatgaagaagtatgtcaagtcccgcccagcacctgcaccggaatctataaaacgcttcaaggagatgaac cagaatggatttacaatgggcatccatcctttatttacaggtggtgatgaggagcaggagaggcagtccctactgaaggc tctaaaatcctacaaagccaataataccatctttgaagtgaacacgacagcaaaaacacaggcatttgacatcatgaaga agaaaagaaggtggcaccaggacgttatcgagaaacggcaccagaactatgaggatcatttagctagtcagaaaccacag gatgaggatcgacctgaaacgacccttaatactgcagatgaaaatgatcttgagaatgccttcagtgttgtgattgggtc aaagaggaaacatcagcagtttgtgtttgagccaaagaaaaagaagaaaatttcaacaagggatgaagaaaacttccttc attacagaccgaaagactttcagtcggagagaggtctaagtttaacatcaggatttgaccaggaggcatctggtgctata ctggacgtcagtggtgcagatgaccgtttaaataacaggaacaagtcacatgtacgatgtctaagtttaacatcaggatt tgaccaggaggcatctggtgctatactggacgtcagtggtgcagatgaccgtttaaataacaggaacaagtcacatgtac gatgggatagaaagaagaagaaatttgtaaatgttggtgatgtcgaagccaagaagaaaaagatccgcacagaaagtgga gctcttatctcagcatcgtacaagtcacatgcatatcctttaatgatatga |
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Protein
| Protein ID | pfu_aug2.0_60.1_00150.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_60.1_00150.t1 MGKLKKVQKKHIQNKQKKSRNLKEKSTIINGTRSSAKSSRSHSHPKKRSHNNKPETNDSDIEVMKSNNDVKKLADQSESE EDSDSDKEYRDTRQWVTQQNRKKKKSGGFQSMGSLSHHVYKGIIRKGYKIPTPIQRKTIPIILDGKDVVAMARTGSGKTA AFLIPMFERLKSHTGVAGARALVLSPTRELALQTLKFTKEIGKYLNLRAAVILGGDKMDDQFAALHENPDIIIATPGRLL HVLMEMDLKLKCVEYVVFDEADRKVDNVIMQKXETKLSDLLKMSFFHCREDDKVAVLLYLLKNLINPEDQTVVFAATKHH VEYINMMSDYDVFLSSEEMRGISSTYIYSSLDQAARKINVAKFQHKKVKVMIVTDLAARGIDIPLLDNVINYNFPAKAKL FVHRVGRVARAGRSGTAFTMLSVEEMPFLLDLYVFLGRNLKFVSSEKKVEGRVARAGRSGTAFTMLSVEEMPFLLDLYVF LGRNLKFVSSEKKVEDEDGLCGEESTYLFIEHYVTDEDGLCGEIPQTVIDDMEEQLRLWHADSAELVGMKKVCVNAMKKY VKSRPAPAPESIKRFKEMNQNGITMGIHPLFILAGGDEEQERQSLLKALKSYKANNTIFEVNTTAKTQAFDIMKKKRRWH QDVIEKRHQNYEDHLASQKPQDEDRPETTLNTADENDLKNAFSVVIGSKRKHQQFVFEPKKKKKISTRDEENFLHYRPKD FQSERGLSLYLYPXVTDEDGLCGEIPQTVIDDMEEQLRLWHADSAELVGMKKVCVNAMKKYVKSRPAPAPESIKRFKEMN QNGFTMGIHPLFTGGDEEQERQSLLKALKSYKANNTIFEVNTTAKTQAFDIMKKKRRWHQDVIEKRHQNYEDHLASQKPQ DEDRPETTLNTADENDLENAFSVVIGSKRKHQQFVFEPKKKKKISTRDEENFLHYRPKDFQSERGLSLTSGFDQEASGAI LDVSGADDRLNNRNKSHVRCLSLTSGFDQEASGAILDVSGADDRLNNRNKSHVRWDRKKKKFVNVGDVEAKKKKIRTESG ALISASYKSHAYPLMI |
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