Gene
| Gene Model ID | pfu_aug2.0_595.1_17624 |
|---|---|
| Locus | scaffold595.1 : 214470 ... 232469 : - |
| To GenomeBrowser | scaffold595.1:214470..232469 |
| Genes list of scaffold | scaffold595.1 |
| Synonym | pfu_aug1.0_11869.1_03140 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_595.1_17624.t1 | 4 | 1 | RRM_6 | 330 | 397 | 7.7e-19 | 67.4 | 3.4e-10 | 6.4e-07 | 29.2 |
| pfu_aug2.0_595.1_17624.t1 | 4 | 1 | RRM_1 | 330 | 386 | 2.8e-15 | 55.6 | 1.9e-06 | 0.0035 | 16.9 |
| pfu_aug2.0_595.1_17624.t1 | 4 | 2 | RRM_6 | 440 | 498 | 7.7e-19 | 67.4 | 1.0e-05 | 0.019 | 14.9 |
| pfu_aug2.0_595.1_17624.t1 | 4 | 2 | RRM_1 | 441 | 498 | 2.8e-15 | 55.6 | 5.6e-06 | 0.01 | 15.4 |
| pfu_aug2.0_595.1_17624.t1 | 4 | 3 | RRM_6 | 548 | 613 | 7.7e-19 | 67.4 | 8.5e-06 | 0.016 | 15.1 |
| pfu_aug2.0_595.1_17624.t1 | 4 | 3 | RRM_1 | 548 | 612 | 2.8e-15 | 55.6 | 0.025 | 46.0 | 3.7 |
| pfu_aug2.0_595.1_17624.t1 | 4 | 4 | RRM_6 | 624 | 688 | 7.7e-19 | 67.4 | 0.12 | 220.0 | 1.9 |
| pfu_aug2.0_595.1_17624.t1 | 4 | 4 | RRM_1 | 624 | 679 | 2.8e-15 | 55.6 | 2.8e-05 | 0.052 | 13.1 |
| pfu_aug2.0_595.1_17624.t1 | 3 | 1 | SLS | 871 | 936 | 1.8e-06 | 27.5 | 0.00034 | 0.62 | 9.4 |
| pfu_aug2.0_595.1_17624.t1 | 3 | 2 | SLS | 1106 | 1149 | 1.8e-06 | 27.5 | 0.00012 | 0.22 | 10.9 |
| pfu_aug2.0_595.1_17624.t1 | 1 | 1 | Macro | 1231 | 1345 | 4.5e-25 | 87.8 | 9.1e-28 | 1.7e-24 | 85.9 |
| pfu_aug2.0_595.1_17624.t1 | 3 | 3 | SLS | 1476 | 1530 | 1.8e-06 | 27.5 | 0.0092 | 17.0 | 4.7 |
| pfu_aug2.0_595.1_17624.t1 | 1 | 1 | PARP | 1636 | 1820 | 9.2e-29 | 100.3 | 4.4e-31 | 8.1e-28 | 97.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_595.1_17624.t1 | gi|395844845|ref|XP_003795161.1| | 0.0 | |
| pfu_aug2.0_595.1_17624.t1 | gi|397509689|ref|XP_003825249.1| | PREDICTED: poly [ADP-ribose] polymerase 14 [Pan paniscus] | 0.0 |
| pfu_aug2.0_595.1_17624.t1 | gi|667307443|ref|XP_008583378.1| | PREDICTED: poly [ADP-ribose] polymerase 14 [Galeopterus variegatus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_595.1_17624.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_595.1_17624.t1 atgcatgggatgctgcatctgacccacattttccgcttgagtgacttggttcagaagtttggggtagctcagagtgaatt ggttaagaagtttggggttgctcagagtgacttcgttaagaagtttggggtagctcagtatctgacaaagtgcgatgcta cagttaccaaactttcacaaatgctgagatgtcatatagctggttccttggatcacttcaccagagtacaacttgtatta atcattttatcttgttttccacagatgctgagatgtcatatagctggttccttggatcacttcaccagagtacaacttgt actaatcattttgtcttgttttccacagatgctgaatgctgaccatgactttctgagatgtcatatagctggttccttgg atcacttcaccagagtacagttggagcagatacgccatacagtagccaacttactggactgtccccctcactgtgtcctg gttaacggacttgaaccctcacagagtctcctccttactcttatggtacctaaggaactcctggattctctcctgtcagc atctaaagaggagttgtccctcttgggcttccatcacatcaattttatctacattggtaacatggttgacaaaaggattg aaataccttgtataggtcagcatgtcagtgaaattaaaagaatcatggaaatgaatgaaacctttacacaggatctcgac catatcagggctcaatttgtgacacttaaaaatgaaaatgaaaagttacactcagaggtccaacgattacaatgtattga agtggacgtcaggacaatgcctaaattacttcagacttaccccccttatccctctggtgcacccccgccatatcagtcca tagaagtacagggaccacaaactaaagtctcgttcacctcacaggaaagtcatgagagaggtagtgatgaagctctagag acttcagctttttacaccatgtgtataaaagtcaatggtttaccagagtataccaccaaagaaaagcttaagagattttt tgaagatcgcagggaggaagggggtggtcctgtacaggatatcaagttagataaggcacatggcattgcatatatcatgt ttggggatcctgaagctgtgcacagagtaatgcagaacaaacccataatgtatgacgaacactatattgagattcatcct gtcaaacaacatgacgagagttttacagacctcctactcatgtcccctggagataaagtcgatacggcatcccctaggga tgaggtggatacggctgacacagacagtgttgtattagaagtcaaaggtttcagctctaaaacagccgactccaccttgg aggattactttgagagtgagaagtctggtggtggacaggactctatcataactcccattaaacgcaaagcagacacagct tatgttacattcaaaagtaaagcagcagcagaaagagttttacagaggttacatagagtagatcagtcccagctgaccat tcaaaggctttcttctgaccttccaaaacagctgtatgcaagtcagtacagagaacagctacagactgatcccagtccca gtacacaactacagacccatccattgtactatagagatagagtcttggtcagaaacatcaatcctaattccacaaaggac ggaataaataatgttctatcaaaccggaccaaagtagaaatgaccagcttagattatggtgaagatcaaacaacagcttt agtcttctttgatggccctattgatatagatgctctgaagaaagcctgtaactccaagccgtatgataatcagtatctga tgatagaagcagtgccggtaacatgctgtgttatggtggagaacgtagctaatataaccactcatgacggactggaaatg tattttcagtacaaagcaggagggggagaaatcatcaaaataaaaagagatgctgaggatcagagttgtattgtacactt ccttaatccagaagttgtaactcgtgttagtcaggctgttcatgtgttagatggtaacacattgtctgttcgtccatact atgaatgcctcggggtaccagcttctgatgaagagtcaaagttctccgtcccaaggagttttgactttgtaccggaaaat cctgtcaaaatgcagttcattgagaaatcctgtactgctgccatgaaattgaataaagaaatggatagagtacatgctaa gacatcctcgaggaatggtgagaaaaagcttgaagtagattgctctctgacagcttctgttaaaagctgctataccttag ctaggagatggaagcattctgtacagaaagctctcaggtacttcttcgaggaaatcaaagtagatgagtgccatccatta aaagatgtttggaatgaagttgaggagagtttgaagaaataccaggagaggatggacactagtgatgccgtaatacatat ggataaagtaaatgtgacagtgtgtgttattggatggggtgaaacacagaaggacactcttgaaacggtgaaaagtatca tctttgaaaacagtgaagagtttaataaaaggaaaactatcattgaagaagttgttaaccttcgacccattgacatgaga attctgtctcattctcagcagattgaggatttacaagatcgctttcaaaatgtcaccatagaaatcaacagtgaaaatgg ggaagtctgtatttctggtttgcctatagaagtgtatgagtgcaaatccattttgatggaaacaatgaatcgtatgcagt gtgttccagttggagaattttctcagcatcgtgttgattttttgaagtcagaggctatttctagttatctcaaagagcaa tttgccgagaaagattttgatggttttgtagagtatggtcataatggacatgtagttgtctatgcaagtaatgagtgtac tggagttgagctagctcactttctcaaggatgctgtcatagaaacaccaagaagactcgatgaactctctgataaattgc tgcagtcagatcaacttgctaaagaaatagaacgattagaggaggaatataacggaatggttaagataattcccatacct gaggatcattgcatcttaacccttgttgtagcttccgaagaccaaggtgaagttcttgagaaaatagacgactttcttac catcaatgccatagtaggggaattcttacctctacctgcagcagtgattcaccatctgcagaaacacaaaactgctgagt tacaggccatctgtgacagatatagcgcagaactagtgggtgtagaatacacttcaggtggaatctgtgttacagggacg gaaaaaggggttcgtcctgctgaaactgacgtagctgctgtcatcaatagtattactcagaaacattttactttagaaaa accaaatattatcaattatttgaagtcaagcaatggtgagatttgtgtggaaaaggtagaacaagctaagaaatgctcag tcagtctttactctaagggagataaggattttatcaaagagaaggagagcatcaaggcttcatcggcagcacagagtcaa tcagaggtatatgccaagtgtgatctggatggaggacactgcatacaggccgttctttgtgacattacagagatgactgt cgatgtggtcgtaaactcggctgatagtggactaaaacttgaaggtggcttagccaggattctgtctcagaaagctggac aacaaatgcaaaaggagtgtagtgatttcatgaagaagaagaaggagaagctatctaatggtgaggtatttatgagctgc tctggagctctgagctgtaaacgtgtggcgcatgccgtgggacctgcatggcaaggcggggactacaaggaagagcgcca tctacgggaggctgttatatgtagtctagaatattgtgacaaggaaggctacaggagtatagctattccagccattagta caggagtctttaactacccactggacaaagctaccttggttataacagaagctgtgagggattatttctctgaggagaac acagattctggtataaaggaggtgcacctctgtaacatcaagcctaacgtggtggaggcctttgtggtcagtatgaaggc aagcctccccaatgtcaccgtacttcaacatgaaaactcctcttggaaaaaatatgaaaaaggtacaatgaggatgacca taagccagcctggtttatctgcagtgttaaaggatatggaagtgccagataatatgagtaaagtggatttggtgttttat ggagagagtaaggagaagttagaggaggcattccatcagttacaagatgacatagaggaggattataggacagcacctgt tattgaggaggacgaaatcattagatttgggaggaaagagagagctgaaatctcagaacttgagaaggaatacaatgtag aaatagagaccaactatcgcattgggagattcaaagtgtatggtttacccaaagacatatcaatggtacaagatgaaatc cacaaaatcatacaaacattttctaagagtgagcagattgaaaagagtgcgcagtatttcgctaaatttgtacagtggta ccttatcgatgagagtgtaggagaaaaacctataccgtttgatattaggatgaacttaaagctggagaaaccatatcgta agaatgagaatgttttacttgttgagcatggagaggagagttatagagtgaattacgtgaagatggaggtccactgtgaa cacgctaacgtacagcatatacttctacgcagggtgctcagtactgaatcctcctctaagcttcccaatcactggaatga catggctaaggaggatgatttgatgattaaaactctgtcaacaacaacagaggaattcaacagagtaaagacagacttcc tgtctagtgtatccagatcactaactactcctacaatcctaaagattgaacgtattcaaaatcgcaccttgtgggtacag tatcaagcaatgaaagaatgtcgcagttcagattttccaagcggaaagcaccttgagcgcacactttggcatgggacaac actagaggccatcgaaggcatcaacatgtacggatttaacagtcgatactgtagtacaaacacaaaagctgcacggtatg gccaaggcgtatactttgccagtaatgccacaaccagcatgcgtgacatgtattccaaaccagacgagcacgagaagaag cgtatgtatcaatgcagggtcctgactggggaatacacagagggtaacaaagacctaacgataccacccgagagaaaacc aggacagttttatgactcagtggtggatgatgtaaataaccctcaagtatttgtgatatttaaagatagccaagcttatc cagaataccttatcactttccagtga |
|
Protein
| Protein ID | pfu_aug2.0_595.1_17624.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_595.1_17624.t1 MHGMLHLTHIFRLSDLVQKFGVAQSELVKKFGVAQSDFVKKFGVAQYLTKCDATVTKLSQMLRCHIAGSLDHFTRVQLVL IILSCFPQMLRCHIAGSLDHFTRVQLVLIILSCFPQMLNADHDFLRCHIAGSLDHFTRVQLEQIRHTVANLLDCPPHCVL VNGLEPSQSLLLTLMVPKELLDSLLSASKEELSLLGFHHINFIYIGNMVDKRIEIPCIGQHVSEIKRIMEMNETFTQDLD HIRAQFVTLKNENEKLHSEVQRLQCIEVDVRTMPKLLQTYPPYPSGAPPPYQSIEVQGPQTKVSFTSQESHERGSDEALE TSAFYTMCIKVNGLPEYTTKEKLKRFFEDRREEGGGPVQDIKLDKAHGIAYIMFGDPEAVHRVMQNKPIMYDEHYIEIHP VKQHDESFTDLLLMSPGDKVDTASPRDEVDTADTDSVVLEVKGFSSKTADSTLEDYFESEKSGGGQDSIITPIKRKADTA YVTFKSKAAAERVLQRLHRVDQSQLTIQRLSSDLPKQLYASQYREQLQTDPSPSTQLQTHPLYYRDRVLVRNINPNSTKD GINNVLSNRTKVEMTSLDYGEDQTTALVFFDGPIDIDALKKACNSKPYDNQYLMIEAVPVTCCVMVENVANITTHDGLEM YFQYKAGGGEIIKIKRDAEDQSCIVHFLNPEVVTRVSQAVHVLDGNTLSVRPYYECLGVPASDEESKFSVPRSFDFVPEN PVKMQFIEKSCTAAMKLNKEMDRVHAKTSSRNGEKKLEVDCSLTASVKSCYTLARRWKHSVQKALRYFFEEIKVDECHPL KDVWNEVEESLKKYQERMDTSDAVIHMDKVNVTVCVIGWGETQKDTLETVKSIIFENSEEFNKRKTIIEEVVNLRPIDMR ILSHSQQIEDLQDRFQNVTIEINSENGEVCISGLPIEVYECKSILMETMNRMQCVPVGEFSQHRVDFLKSEAISSYLKEQ FAEKDFDGFVEYGHNGHVVVYASNECTGVELAHFLKDAVIETPRRLDELSDKLLQSDQLAKEIERLEEEYNGMVKIIPIP EDHCILTLVVASEDQGEVLEKIDDFLTINAIVGEFLPLPAAVIHHLQKHKTAELQAICDRYSAELVGVEYTSGGICVTGT EKGVRPAETDVAAVINSITQKHFTLEKPNIINYLKSSNGEICVEKVEQAKKCSVSLYSKGDKDFIKEKESIKASSAAQSQ SEVYAKCDLDGGHCIQAVLCDITEMTVDVVVNSADSGLKLEGGLARILSQKAGQQMQKECSDFMKKKKEKLSNGEVFMSC SGALSCKRVAHAVGPAWQGGDYKEERHLREAVICSLEYCDKEGYRSIAIPAISTGVFNYPLDKATLVITEAVRDYFSEEN TDSGIKEVHLCNIKPNVVEAFVVSMKASLPNVTVLQHENSSWKKYEKGTMRMTISQPGLSAVLKDMEVPDNMSKVDLVFY GESKEKLEEAFHQLQDDIEEDYRTAPVIEEDEIIRFGRKERAEISELEKEYNVEIETNYRIGRFKVYGLPKDISMVQDEI HKIIQTFSKSEQIEKSAQYFAKFVQWYLIDESVGEKPIPFDIRMNLKLEKPYRKNENVLLVEHGEESYRVNYVKMEVHCE HANVQHILLRRVLSTESSSKLPNHWNDMAKEDDLMIKTLSTTTEEFNRVKTDFLSSVSRSLTTPTILKIERIQNRTLWVQ YQAMKECRSSDFPSGKHLERTLWHGTTLEAIEGINMYGFNSRYCSTNTKAARYGQGVYFASNATTSMRDMYSKPDEHEKK RMYQCRVLTGEYTEGNKDLTIPPERKPGQFYDSVVDDVNNPQVFVIFKDSQAYPEYLITFQ |
|