Gene
| Gene Model ID | pfu_aug2.0_556.1_20901 |
|---|---|
| Locus | scaffold556.1 : 69646 ... 90694 : + |
| To GenomeBrowser | scaffold556.1:69646..90694 |
| Genes list of scaffold | scaffold556.1 |
| Synonym | pfu_aug1.0_491.1_43709 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| enzymatic polyprotein endonuclease reverse | GO:0016740 GO:0090304 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_556.1_20901.t1 | 1 | 1 | RVT_1 | 552 | 712 | 1.1e-25 | 90.2 | 6.9e-29 | 2.1e-25 | 89.3 |
Transcript
| Transcript ID | pfu_aug2.0_556.1_20901.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_556.1_20901.t1 atgcatatccagggaacctgcatctggctgcaatgtcatccagcagaaatcaatgtctgtttacatattttgtgtcttga tatgcatatgaatgacagatttggaaacaaagcaatgaaggaaagctatatcgcggaggcgaaaatgaggaagaaatgta aaactgaatcgtttcgtgatttcggacaagcagtcgccgatttataccgacgagcgcatccagacaatagagagtatgtg gaggaggcaagcctcaaaacattcatggataactgcagtgacgtcgatgattttcgattagctgtaaagcgtacgagacc ggcgaatctccaaagtgcggttactgccgcaatgcaggaagaatgcatacgcatgacggagaatattaaagttcgcgaaa gaggaattctaagaccagtgtacggagtgcgtgatctgactaccaatgtgaataaaaaggatccgaaagaagaaaatatg aaacaaagaaagtgttttctgtgtaattcaacccaacatttatttaaggattgtcccaacaaaaggcgcgaaataaagaa agttactacggcaacacaaacagatgttgtgaagcacttgaagtatctctctagtgtcggtcagaacagtgatcatgtta cgataaaaggtgaacgcggaatgaagctaaaagggctaattgaagggacgccactggagtggaaattagatactggtgct atcaattcatttatcacggaggatgtgtattacagcattcccgaggaacaaagacctgtgcttgagcgcgcgaaaaagac atttcaagctgcaaatgggaacaatttgaatgtgcttggagctactaaaatgttaatttcattttctggatttaatgtga tttttcgtgtatttgttggaggagtgaatacaaacctgttaggattagactttatcacacgatatcagtgtcattgggat tacagtacagactcctgcatcctgaaaagtctaccggaagatagtgaatcgtgtttgcgcggctgtatggtttatagtac tgagaagtgtgctatacccccgtgtcatgaagctgtaatcaaagcaagggtggatcaaaaagtaaaatcttgtgatggaa ttcttgtgccgttgaagaagtttattcttgaacatggattaattgttgcacgtgtgcttgtgagaataaatgcagacgag gagtgtatttatttgcgcgtgttaaatccgaatgactatcatgtgcatgtgcgtgaaaacacagtgatggcgttgtttga acccgttaatttcatatcgtcatcaaatgtgcctgaggtgtgcagcgttgatgtgaatatgaagaaggaattaccagatt tccttgagtctacattcattgaaggatgtaaacatttaacggaggggcagatagaagaattccgagattttatgattcgc cgaagagatgctttcgccgacccacgtaaagcggcagagcgtgctaatattggagaacatttcattaaattgaaggagga agtaccgtttaaggaaccagtgcgcagggttcccatattcaagcgtgaaataatggatagtgagatccaaaagcttgaag agcaggggctaattgagaagtcaaatagcccatggtcgtctccccttgttttagttcagaagaaagacaagagttggaga ctttgcgttgattacaggaaattaaatgcaaacacagtgaaggatgcctaccctataccccgtgtagcagatgacctcga ttctctcgcaggagcaaagtggttttcgtcattagatctaaacatggcttatcaccagattcccatgcacgagaaggata aggagaagacagcgtttgctactccccgtggtggactgtaccaatacacagtaatgccgttcggattatgcaatgcaccg gcgacgttccagcgggtgattgaaaaagtcttgagcggattacaatggcgcatatctgtattatatctggatgatatcat agtgtacagtcgtgattttaaatctcatttggaaaacttagacatggtgatcgatagacttcagaaagcaaatttgaaat taaaagcgaaaaagtgtcagttactaaaacaggaagtaagtttcttaggacacattgtatcacaggaaggagttaaaaca gacccttctaaaatcactgttgtgaaagagtggaaaacgccaagaaacgcgtcagaacttcggagttttctaggacttgc tacatattatagacgattcattaaagattttgcaaagattgcgaaatgcttgcatgcacttacaggaaaaaggagtgtat ggaattggacaagtgaatgtgacgaggcctttcagttactaaaggctaaacttgtgacatcacctattcttggatacccg gatgttcatggcggcgaattcattttagatacagacgccagtaacgattcaattggatgtgtgctatcgcaaaatatagg cgacaaggaaattgtgatatcgtacggaagtcgtgtgttgacaaattcagagagaaattattgcgtaacgcgcaaggaaa tgctcgcggttgtgtactttataaaacactttaagcattacttgcttggaagagaatttctgttacgtacagatcatgga tcgcttgtgtggctacacaaaatgaaggaaccggaaggacaaatggcaagatggctacagcagttagggccatatgtatt ccgaattcaacatcgacctggaaagcggcatagtaatgcggacgctttatcaaggataccgatagactcaatttgtaaac agtgcaagcgaagtgtgcatagtgaatgtgatgtgattgagcgctattcacacataagtgaattgagaaatagtttgaaa atttctcaagtttgtgacagtgatgactttgcgttgaataaactttttaacgaagcagaaaatatgagtttcaataattg tgcgccaatctcttcaacacgaaaaacaagagcaaacagaccgaatagagcgagagcgagaaaacaaccgacagaatcac ttagttgtgaaaacatcagaaaacatcaaataaatgacaatggaatgtgtttaatttttcgttggcttgagaagtgcgaa aaacctcccttatcagtgattacatgtgaaaatttcgagtgcaagtttctttactcaagatgggatcttttgtgtattga tcgcggagtgttgtgtattcgatggatcgaaagcgacagagagacgttaaagatattcgtacctaagacgctgcgtgacg ttattctatggcaattacacgatgcagaaagtgcaggacacatgggtgcgaagagaactctcgcgaaggtgcgaaattct aattattactggccaaggatgcgacaaagtgtgaatgaccatgtgttatcttgtgatatatgtgaggaacggaaggcccc atctaggaagaaaagagcttacatgaaacaatttcttagtggtgaaccttttgaacgagtgggaatcgatattgcgggac cttttccgaaatctagcaagggatacttatacatattagtggtagcagattattttagagtgaagaacaaagggaagcat gacgtcatatgcaaaaagtgcgctaaagcttgtaacgtgcaaatttacgtaggaatacattttaaagtatgtcaaatggg aatcgatatctacatgtgttcgtttttgaccggattgcgaagcaaaatccggtgtatgagatggcaaagtcagtctgtca gtctgtttttttccgtctgtccgtccgtccatcagtccatctgtccattaaacatttcttgtggtttccagtcctctgaa actgttggtgatggaaagtaa |
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Protein
| Protein ID | pfu_aug2.0_556.1_20901.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_556.1_20901.t1 MHIQGTCIWLQCHPAEINVCLHILCLDMHMNDRFGNKAMKESYIAEAKMRKKCKTESFRDFGQAVADLYRRAHPDNREYV EEASLKTFMDNCSDVDDFRLAVKRTRPANLQSAVTAAMQEECIRMTENIKVRERGILRPVYGVRDLTTNVNKKDPKEENM KQRKCFLCNSTQHLFKDCPNKRREIKKVTTATQTDVVKHLKYLSSVGQNSDHVTIKGERGMKLKGLIEGTPLEWKLDTGA INSFITEDVYYSIPEEQRPVLERAKKTFQAANGNNLNVLGATKMLISFSGFNVIFRVFVGGVNTNLLGLDFITRYQCHWD YSTDSCILKSLPEDSESCLRGCMVYSTEKCAIPPCHEAVIKARVDQKVKSCDGILVPLKKFILEHGLIVARVLVRINADE ECIYLRVLNPNDYHVHVRENTVMALFEPVNFISSSNVPEVCSVDVNMKKELPDFLESTFIEGCKHLTEGQIEEFRDFMIR RRDAFADPRKAAERANIGEHFIKLKEEVPFKEPVRRVPIFKREIMDSEIQKLEEQGLIEKSNSPWSSPLVLVQKKDKSWR LCVDYRKLNANTVKDAYPIPRVADDLDSLAGAKWFSSLDLNMAYHQIPMHEKDKEKTAFATPRGGLYQYTVMPFGLCNAP ATFQRVIEKVLSGLQWRISVLYLDDIIVYSRDFKSHLENLDMVIDRLQKANLKLKAKKCQLLKQEVSFLGHIVSQEGVKT DPSKITVVKEWKTPRNASELRSFLGLATYYRRFIKDFAKIAKCLHALTGKRSVWNWTSECDEAFQLLKAKLVTSPILGYP DVHGGEFILDTDASNDSIGCVLSQNIGDKEIVISYGSRVLTNSERNYCVTRKEMLAVVYFIKHFKHYLLGREFLLRTDHG SLVWLHKMKEPEGQMARWLQQLGPYVFRIQHRPGKRHSNADALSRIPIDSICKQCKRSVHSECDVIERYSHISELRNSLK ISQVCDSDDFALNKLFNEAENMSFNNCAPISSTRKTRANRPNRARARKQPTESLSCENIRKHQINDNGMCLIFRWLEKCE KPPLSVITCENFECKFLYSRWDLLCIDRGVLCIRWIESDRETLKIFVPKTLRDVILWQLHDAESAGHMGAKRTLAKVRNS NYYWPRMRQSVNDHVLSCDICEERKAPSRKKRAYMKQFLSGEPFERVGIDIAGPFPKSSKGYLYILVVADYFRVKNKGKH DVICKKCAKACNVQIYVGIHFKVCQMGIDIYMCSFLTGLRSKIRCMRWQSQSVSLFFSVCPSVHQSICPLNISCGFQSSE TVGDGK |
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