Gene
| Gene Model ID | pfu_aug2.0_551.1_04331 |
|---|---|
| Locus | scaffold551.1 : 256392 ... 270015 : - |
| To GenomeBrowser | scaffold551.1:256392..270015 |
| Genes list of scaffold | scaffold551.1 |
| Synonym | pfu_aug1.0_11307.1_24869 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_551.1_04331.t1 | 3 | 1 | TPR_12 | 154 | 223 | 3.6e-16 | 58.8 | 1.3e-05 | 0.016 | 15.1 |
| pfu_aug2.0_551.1_04331.t1 | 4 | 1 | TPR_7 | 197 | 218 | 3.7e-08 | 32.5 | 0.0022 | 2.7 | 8.0 |
| pfu_aug2.0_551.1_04331.t1 | 3 | 1 | TPR_14 | 199 | 226 | 1.2e-06 | 28.5 | 0.012 | 14.0 | 6.6 |
| pfu_aug2.0_551.1_04331.t1 | 3 | 2 | TPR_12 | 248 | 316 | 3.6e-16 | 58.8 | 2.4e-09 | 3.0e-06 | 27.0 |
| pfu_aug2.0_551.1_04331.t1 | 3 | 2 | TPR_14 | 288 | 316 | 1.2e-06 | 28.5 | 0.0013 | 1.7 | 9.5 |
| pfu_aug2.0_551.1_04331.t1 | 4 | 2 | TPR_7 | 290 | 310 | 3.7e-08 | 32.5 | 0.00028 | 0.34 | 10.8 |
| pfu_aug2.0_551.1_04331.t1 | 3 | 3 | TPR_12 | 327 | 380 | 3.6e-16 | 58.8 | 2.3e-07 | 0.00029 | 20.7 |
| pfu_aug2.0_551.1_04331.t1 | 4 | 3 | TPR_7 | 327 | 350 | 3.7e-08 | 32.5 | 0.00011 | 0.14 | 12.0 |
| pfu_aug2.0_551.1_04331.t1 | 3 | 3 | TPR_14 | 330 | 353 | 1.2e-06 | 28.5 | 0.003 | 3.7 | 8.4 |
| pfu_aug2.0_551.1_04331.t1 | 4 | 4 | TPR_7 | 367 | 376 | 3.7e-08 | 32.5 | 0.2 | 250.0 | 1.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_551.1_04331.t1 | gi|291236033|ref|XP_002737930.1| | PREDICTED: tetratricopeptide repeat protein 29-like isoform X1 [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_551.1_04331.t1 | gi|390339590|ref|XP_795511.2| | PREDICTED: tetratricopeptide repeat protein 29 [Strongylocentrotus purpuratus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_551.1_04331.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_551.1_04331.t1 atggcagctacgctgcctcccataaaaagtcccgcggggcgacagaatgtccagcagtacaacatggccataccgtcccc gcctaaaggccctcctagcggcaagcttaaaccaatcagaaaagtgggcaaagccgacagggaaatattattcaaacaag aagtactgcgccaacagcaacctgatctaaataaaaaacagacaaccagctacagaaatagttataaacataacctgtgt ttggacatgttacaagatggctaccataagtcattcagtgaactttttgcacttattcaacaacaggaagaggagcgtct tcggcaaggtcccgaatcgttaatgtggacacaaaaaatgttaaaagacagacatcaggaattagatatgttaaagtttc atttaactaaagccgaagaggcattgagaaaagatgattactcagaggtttaccacaacagatatgagctagcacgctac ttccagtcaacgggagacaaatggctgtcagatcacttctttaacacttgcctacagacaacagacctggtaacaggaga tgagggcaagctgagagctcagggccacgataatgttggtagtgctttagaggaaaatggtgactatatagcggcagctg aacattacgaggcgtattataagttagccgtagatcataaggagtggatccaggccgacggtctcacgtaccatacagag gcgtgcatcaatctctcccgtatttataccgtcattgccgacaaaatcgttgaggaggaggcagagaaatccctggaata tttgaaagacgcacacagatatgctaatgaaagtggcgatagaacattggaaggaaagacggcttacaaactaggtcaag cctacgacaaatcaggcgatggggaaacggccttacagtatctgaaggcgtaccttgacatttgtaatgcatccaaggac agtgacggtatagggaaagcttgtgacgccatcgctaaggcttatgccagacaaggaaaacttgagtcgagtatcgacta tcttaagaaatttgtggaagtgtcagagtctgggggagaggaaaaggggctaagtcgagcctgtcataacctgggaaata tatataanaatcgcattagatttttgtaa |
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Protein
| Protein ID | pfu_aug2.0_551.1_04331.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_551.1_04331.t1 MAATLPPIKSPAGRQNVQQYNMAIPSPPKGPPSGKLKPIRKVGKADREILFKQEVLRQQQPDLNKKQTTSYRNSYKHNLC LDMLQDGYHKSFSELFALIQQQEEERLRQGPESLMWTQKMLKDRHQELDMLKFHLTKAEEALRKDDYSEVYHNRYELARY FQSTGDKWLSDHFFNTCLQTTDLVTGDEGKLRAQGHDNVGSALEENGDYIAAAEHYEAYYKLAVDHKEWIQADGLTYHTE ACINLSRIYTVIADKIVEEEAEKSLEYLKDAHRYANESGDRTLEGKTAYKLGQAYDKSGDGETALQYLKAYLDICNASKD SDGIGKACDAIAKAYARQGKLESSIDYLKKFVEVSESGGEEKGLSRACHNLGNIYXNRIRFL |
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