Gene
| Gene Model ID | pfu_aug2.0_551.1_04325 |
|---|---|
| Locus | scaffold551.1 : 101666 ... 155038 : + |
| To GenomeBrowser | scaffold551.1:101666..155038 |
| Genes list of scaffold | scaffold551.1 |
| Synonym | pfu_aug1.0_1549.1_44059 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| glycine receptor subunit alpha-2 isoform x3 | GO:0005886 GO:0007218 GO:0016021 GO:0016594 GO:0016934 GO:1902476 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_551.1_04325.t1 | 4 | 1 | Neur_chan_memb | 68 | 91 | 7.0e-33 | 114.4 | 5.0 | 15000.0 | -14.8 |
| pfu_aug2.0_551.1_04325.t1 | 4 | 1 | Cadherin | 456 | 533 | 1.4e-38 | 130.9 | 4.3e-08 | 0.00013 | 22.1 |
| pfu_aug2.0_551.1_04325.t1 | 4 | 2 | Cadherin | 538 | 620 | 1.4e-38 | 130.9 | 1.2e-11 | 3.4e-08 | 33.6 |
| pfu_aug2.0_551.1_04325.t1 | 4 | 3 | Cadherin | 641 | 727 | 1.4e-38 | 130.9 | 4.9e-15 | 1.5e-11 | 44.4 |
| pfu_aug2.0_551.1_04325.t1 | 4 | 4 | Cadherin | 756 | 829 | 1.4e-38 | 130.9 | 8.0e-11 | 2.4e-07 | 30.9 |
| pfu_aug2.0_551.1_04325.t1 | 4 | 2 | Neur_chan_memb | 951 | 1025 | 7.0e-33 | 114.4 | 1.0 | 3100.0 | -2.2 |
| pfu_aug2.0_551.1_04325.t1 | 1 | 1 | Mab-21 | 1248 | 1446 | 1.29998e-41 | 142.6 | 8.40779e-45 | 2.59997e-41 | 141.7 |
| pfu_aug2.0_551.1_04325.t1 | 1 | 1 | Neur_chan_LBD | 1865 | 2055 | 1.49939e-43 | 148.4 | 0.0 | 2.70451e-43 | 147.6 |
| pfu_aug2.0_551.1_04325.t1 | 4 | 3 | Neur_chan_memb | 2083 | 2172 | 7.0e-33 | 114.4 | 1.2e-35 | 3.5e-32 | 112.2 |
| pfu_aug2.0_551.1_04325.t1 | 4 | 4 | Neur_chan_memb | 2199 | 2226 | 7.0e-33 | 114.4 | 1.3e-06 | 0.0039 | 17.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_551.1_04325.t1 | gi|325297032|ref|NP_001191520.1| | GluClAc2 [Aplysia californica] | 0.0 |
| pfu_aug2.0_551.1_04325.t1 | gi|325297029|ref|NP_001191519.1| | GluClAc1 precursor [Aplysia californica] | 0.0 |
| pfu_aug2.0_551.1_04325.t1 | gi|676432487|ref|XP_009046590.1| | hypothetical protein LOTGIDRAFT_180167 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_551.1_04325.t1 | gi|533115978|ref|XP_005373589.1| | PREDICTED: glycine receptor subunit alpha-3 isoform X3 [Chinchilla lanigera] | 0.0 |
| pfu_aug2.0_551.1_04325.t1 | gi|632948857|ref|XP_007889828.1| | PREDICTED: glycine receptor subunit alpha-2 isoform X1 [Callorhinchus milii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_551.1_04325.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_551.1_04325.t1 atgagagggtccatagagaagggggaaaccggagttcccgaggaaaaacctcctaggactggctatagacaaaaaataaa ggattttgatgattacgatggtgatgggggtcgttgtggtgatggtaatgatggtggttgtggtggtggtggttgtggtg gtagtggtggtggtggttgtggtggtggtgtggtggtggttgtggtggtggtggtagtggtggtggttgtggtggtagtg ttggtggtggtggtggtggtggttgtgatggtggttgntgtgngttgtgtagtggtgtgtggcgtgtgtcgtgtgtgtgt gtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatgatgatgatgatgatgatgatgatgatgatgatgatgatg atgatgatgatgatcgacaatgctcctctggacagttggtgggggaaacttcaacagttccaaacttaaatacaggcagt tcccagggaactaatatattattgaattcggacgatggactattcacaatttcatgttgcggccaggtagagtcctggac attcgatgctggtaatacaggatcattgcaactacaaatttggcgaagagacgctgaagttggtacatgggcgctgattg gaggaaatgatgtaaccgtttctgcgattggagagcagacacacgatgtatcgtcatctgacagaatagcagtaagagga aatgacgtcatcggaagttctcaaccgggtgacgaaattataaggtacagaaatcaggcaccaacgaatcgcaactacta cgaaatgtcgaacgaaagcagcattggtgtcggcgaaacatatgactgggattccgagatcaaacaagaagacaggcgat atgtcttatacgctacactaggaccaggaactaatatattattgaattcggacgatggacaattcacgatttcatgttgc ggccaggtagagtcttggacattagatgctggtaacacaggaacattacaactacaaatttggcgaagagacgctgaagt tggtacatggacgctgattggaggaaatgatgtaaccgtttctgcgattggagagcagacacacgatgtatcctcatctg acagaataacagtaagaggaaatgacgtcatcggaagttctcaaccgggtgacgaaattataaggtacagaaatcaggcg ccaacgaatcgcaactactacgaaatgacgaacgaaagcagcattggtgtcggcgaaacatacgactgggattctgagat caaacaagaagacaggcgatatgtcttatacgctacacttggaccaggaaattctccgacttttgaaaatctcccgtcct actccagtattccagaggacgctacatccgggacatctattatgcaaattagcacacgtgacgtagatggtgacaatgtg acgattaccatgacaacaggaacatctatgtttgaattttattctgaaaatggaacagtatctacactcggcagtttggc ggaggggtttcatactcttgattttcaagccatggatacatgtggaaacagcaacacttcaacattaacagtatgggtat acaaagagagttcctttgaattagatgaaaaccagccagttggaaccaatgtaggacagcttattcaaccagatagctta actgtcaactacacaatcgcaggaagtgtctcagacttcgcagtagacgagttgaccggcttgctttccactcttgttga actggactacgagtcaacacccctgtataaccttcaagtagaaattgcgttttcatctcctacctttactgcaacaacca atgttaccatcagtgtattgaacttaaacgaatttgatcctcagttcgataactcaactttgagtggttttgtcatcaaa acggcttcaataggaacttccgttttacaaataagcgcgtttgacgttgatacgaatataaattcaacatgcaattacac gatgcttgaacctagtaacaacaatgcgactgcatattttgatctggacctcgtcaccggtgtacttacagttaaggctg gtttagaccgcgaaacaataaaccattttgaattcgaagtcgaggctctggagggaggttatccggcaaggagttcaaac acaacgatcagcgtgagaatttgggattataatgatttcaacccggtgatgtcaagttctttctatgacggtgcgacaag taacagtgacttttgcgatgatgcgattgttacgatattggcaactgacaatgatatcaataaaaatgcccggatgtcgt actatctagtccaaagtgacgacagttacctgttccgaatgaacgagacgacaggtgaattatccagtgtcgggtcattg tcaaaaaacaagtatatcgtcgaaggcaaagctcgagataatggcaatatagagctacattcaaccggaagttcaaccat tagaatagatactttcaatccttccgatgtgatactttcgttttacatggacataagcagggacacttacatgagtaacg aagacactttcctcgggggcttagagagcgacgttttcagttcgtcctatccaagtgctcaagttagaagatggtgtatc caggaaaacacaactgattctatcatcgtacatgtttacgttctggacagtaatacaacaggtagtatttctaacatcgg agtggacaaggtcttcgtcaataatacagacgccgttcgctatgtagcaacagacgagagtgggaccttgtctgcaaaaa taactgggaattcatggtccgtcttcaacctccaaaaagtactgatgtacaccactgtaacaacaacaacaacagcatct gttgacattacgacgtcatcgttaccatggatacagacgacagagggcattgcagtcattgctgcgtgcgcaactgttgg acttttgttgattgtgattacaggaagctgtatcacaattgctataaccagatgtcgtaaaaaatcaccagagttgacag gtagaactataaatgagttaaagaagatcctgacgataaactcaacagcattcacactagagcacttaattgagcatcga cggagccctagcaagctagaggtgggaccaggtgcccgggaggagtcaatgttcagtaaaccacggacaatacagaatca tggtaaacaatcatcggtaccaatcggaacccctcggcaaactccggaaactggtctaccgtcggttgagaacgatgata agtcgtctgcaggggacggaagctacattttcaaaaaccggaaatttgacggaagagtgtatgagaaagaggaacagaaa ttgaaaatgtccatctacattacgcttacatacctgtttggaacagaattaattttgaatttaagaaggcaactcgtgct actaagggaaaggttgaagtcgtacggaaatgacaatttacattatagatgctctggaagtcttggagaaggcgtggcct accctccgtcagacgatgacctcatggtatatagaactggcaggcgtgtagtgagtaagccccaagaggggacacaggat ggcgatgttgtgatggcacgtataaatggatccccgggatattgtttgctacttgatatcagaaattgttatccccagaa cgttcaatgtgattcagatggcattccatttgtctcctcatcactttggaaagaacatatcaatcctccaagggaagatt gctacattcacgggccatgtcacacttttgctgtaggtgatgacgagtatgacgttgcctcagtcattccctgttctttt tggcctgatatcgcatgtgattggattagcagaaaacgttctcatggatggccgtcccatgacacaattcaggatattgt cagagacaaatgccacgtggtgccaatcggtgacccagattctcctttacaacagcatgcttggaggatatccttctccg tagcagaaaggacacttatgcattctttaaaccatgtccaatttctaacctacaatctcttgagactaacacttaaacgg ataatagataaaaaatttccaggaataatatgctcctatttcatgaaaaccactttattctataccattgaaaaaacatc agcacaactttggacagcacataatctagaagcttgctttaaagtttgtctctcaacgctgtatgactttatagacaata ttaactgcccaaattatttcataccagagtataatatgataaaacgcaaagtgaatcgtacaaaccgacaagaattgctt gacacaataagaaatattcattcaactgataccgaaagtatcttaagcatttgtggggaaccttcaaacatgtatttgga agaaagactttcgttacaaatcatggaatggcgcttcgacagagagatatatgattcagtccatgttgttaaattaactt cagttatctatgacgtcataactgaaaccacagtatcctccatgtgcaaattcgtacattttttgctcggaaaaggcaca ttctcacggtacgtagttagtggaatactcttacaaagactggttgtttgctgctgtctcaagcttatggatacattcgt aaggctgccaaatgcaaataaacagaggtacagactccacaaaaccataaaggctttactaaggatcggacacaggggag acctgactacaggcaaattgacaatagccaactacatgtttctgataggcaaaacacatactaccctttctgttgttcaa gaaatagttttacaatatcctcaatatgccatggatgatatgcctgatgataacaaaacagcagcgtatgtggaagttat gtgtggtaaaggatattctctggctaataaagcgaggcgtgccttggcaccaacttactcaatcttgtcacatcgtatca ttgacgttgttccttcccctttgaaaattcttatctctatagaaagatttttctccttgccctccatcatatatgcgctg gtcctagaatgcctttgttacattcgactcaaagatagactttcagtggtgaggtcaacgaagcgccttgttaagcatat gcatacgttggactggaggtatgaccatgctaattcgagaatatgtgttggaatcatcaagtatgtacaaggagaccatc actcggcatgtagatggttcggatcagcttttgttttgaaggataaggtcatagctccattagatgaaactgcggctgct ttagggcagatgaacgttttatcaaggtgtgctacggtttctcacggcgagcaaaggaatgtgttagccgtttcgtcacg ttcagtcacgtttcttctgatcaccggaaaacaatgcacagctgctgagaggagagctatcaggtataatgacctgagaa cagacgtcgacatgtataatgacctgagaacagacgtcgacatgtggacgtgcatcatacacgtggcatgtgctgtacaa gccatggtgatttccagcctcttcaacggagtactgaccagaaaggaagtagcacaaaacttctcaagacgtcatcttct gaatactttgttgaatgaatccagatatgatccgaaaattgctcctgacttcgaggaagattatgcaacggtggttacaa tacaactttacgtaatcagtgtagactcgttgaatgaaatgtccatggattattccgtggacctgtacctaagacagaca tggtacgactggagactgagctttgtaaacgagtccagtccctttaacagactagagttaggtcagatgatgatagagaa ggtctgggtgcccgattccttcttttcaaacgagaaaaaagcttctttccatactgtgacggtccccaataaactgatgc acatctataggaacgggatgatcaaatacagcgtaaggatctccatgaccctgtcatgtaatttcacattaaggaactac ccgtttgactcccaagtgtgcccaataacaatagaaagctatggatacagtacagacaacgttgtgttcgtctggcatcg taagaagcctatctacatacaacccaatcagctactggcacagtttgagcttaacagacaacccatagtcagaaactgta gtaaggactatgatcaaggtagcaaattcgcatgcatcgaaggaaagcttctcttctcccgtaacgccggatattacctt attcaaatattcattcctagtattctcatcgttgtgttatcatgggtctcgttttggttggatcttgaagccacgcctgc tcgaatttcattgggtgttttgactgttctcaccatgacaacgcaaagttccggtgtgcgcgcgtcacttcctagagtat cctatgttaaagctatagatgtttggatggcggcttgtttgatattcgtctttgcttctctcctagaatttgcttacatc aacgttatgaccagacgacattataaaagagagagcgtcatcgggaatgtgatcaaggaggttcaaaatactacagtaag tggaagcttagaggaaattatatcggcagtggacttcagactcagagccaggagaatagataaaatatcacgagttatct ttcctttcagttttatcttattcaacttagtattttggctgaattacaaagtgtttaatactgatcttaacgctttctga |
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Protein
| Protein ID | pfu_aug2.0_551.1_04325.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_551.1_04325.t1 MRGSIEKGETGVPEEKPPRTGYRQKIKDFDDYDGDGGRCGDGNDGGCGGGGCGGSGGGGCGGGVVVVVVVVVVVVVVVVV LVVVVVVVVMVVXVXCVVVCGVCRVCVWCVCVCVCVCVCDDDDDDDDDDDDDDDDDDDRQCSSGQLVGETSTVPNLNTGS SQGTNILLNSDDGLFTISCCGQVESWTFDAGNTGSLQLQIWRRDAEVGTWALIGGNDVTVSAIGEQTHDVSSSDRIAVRG NDVIGSSQPGDEIIRYRNQAPTNRNYYEMSNESSIGVGETYDWDSEIKQEDRRYVLYATLGPGTNILLNSDDGQFTISCC GQVESWTLDAGNTGTLQLQIWRRDAEVGTWTLIGGNDVTVSAIGEQTHDVSSSDRITVRGNDVIGSSQPGDEIIRYRNQA PTNRNYYEMTNESSIGVGETYDWDSEIKQEDRRYVLYATLGPGNSPTFENLPSYSSIPEDATSGTSIMQISTRDVDGDNV TITMTTGTSMFEFYSENGTVSTLGSLAEGFHTLDFQAMDTCGNSNTSTLTVWVYKESSFELDENQPVGTNVGQLIQPDSL TVNYTIAGSVSDFAVDELTGLLSTLVELDYESTPLYNLQVEIAFSSPTFTATTNVTISVLNLNEFDPQFDNSTLSGFVIK TASIGTSVLQISAFDVDTNINSTCNYTMLEPSNNNATAYFDLDLVTGVLTVKAGLDRETINHFEFEVEALEGGYPARSSN TTISVRIWDYNDFNPVMSSSFYDGATSNSDFCDDAIVTILATDNDINKNARMSYYLVQSDDSYLFRMNETTGELSSVGSL SKNKYIVEGKARDNGNIELHSTGSSTIRIDTFNPSDVILSFYMDISRDTYMSNEDTFLGGLESDVFSSSYPSAQVRRWCI QENTTDSIIVHVYVLDSNTTGSISNIGVDKVFVNNTDAVRYVATDESGTLSAKITGNSWSVFNLQKVLMYTTVTTTTTAS VDITTSSLPWIQTTEGIAVIAACATVGLLLIVITGSCITIAITRCRKKSPELTGRTINELKKILTINSTAFTLEHLIEHR RSPSKLEVGPGAREESMFSKPRTIQNHGKQSSVPIGTPRQTPETGLPSVENDDKSSAGDGSYIFKNRKFDGRVYEKEEQK LKMSIYITLTYLFGTELILNLRRQLVLLRERLKSYGNDNLHYRCSGSLGEGVAYPPSDDDLMVYRTGRRVVSKPQEGTQD GDVVMARINGSPGYCLLLDIRNCYPQNVQCDSDGIPFVSSSLWKEHINPPREDCYIHGPCHTFAVGDDEYDVASVIPCSF WPDIACDWISRKRSHGWPSHDTIQDIVRDKCHVVPIGDPDSPLQQHAWRISFSVAERTLMHSLNHVQFLTYNLLRLTLKR IIDKKFPGIICSYFMKTTLFYTIEKTSAQLWTAHNLEACFKVCLSTLYDFIDNINCPNYFIPEYNMIKRKVNRTNRQELL DTIRNIHSTDTESILSICGEPSNMYLEERLSLQIMEWRFDREIYDSVHVVKLTSVIYDVITETTVSSMCKFVHFLLGKGT FSRYVVSGILLQRLVVCCCLKLMDTFVRLPNANKQRYRLHKTIKALLRIGHRGDLTTGKLTIANYMFLIGKTHTTLSVVQ EIVLQYPQYAMDDMPDDNKTAAYVEVMCGKGYSLANKARRALAPTYSILSHRIIDVVPSPLKILISIERFFSLPSIIYAL VLECLCYIRLKDRLSVVRSTKRLVKHMHTLDWRYDHANSRICVGIIKYVQGDHHSACRWFGSAFVLKDKVIAPLDETAAA LGQMNVLSRCATVSHGEQRNVLAVSSRSVTFLLITGKQCTAAERRAIRYNDLRTDVDMYNDLRTDVDMWTCIIHVACAVQ AMVISSLFNGVLTRKEVAQNFSRRHLLNTLLNESRYDPKIAPDFEEDYATVVTIQLYVISVDSLNEMSMDYSVDLYLRQT WYDWRLSFVNESSPFNRLELGQMMIEKVWVPDSFFSNEKKASFHTVTVPNKLMHIYRNGMIKYSVRISMTLSCNFTLRNY PFDSQVCPITIESYGYSTDNVVFVWHRKKPIYIQPNQLLAQFELNRQPIVRNCSKDYDQGSKFACIEGKLLFSRNAGYYL IQIFIPSILIVVLSWVSFWLDLEATPARISLGVLTVLTMTTQSSGVRASLPRVSYVKAIDVWMAACLIFVFASLLEFAYI NVMTRRHYKRESVIGNVIKEVQNTTVSGSLEEIISAVDFRLRARRIDKISRVIFPFSFILFNLVFWLNYKVFNTDLNAF |
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