Gene
| Gene Model ID | pfu_aug2.0_531.1_04306 |
|---|---|
| Locus | scaffold531.1 : 287142 ... 292661 : + |
| To GenomeBrowser | scaffold531.1:287142..292661 |
| Genes list of scaffold | scaffold531.1 |
| Synonym | pfu_aug1.0_3919.1_23432 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_531.1_04306.t1 | 2 | 1 | zf-B_box | 16 | 54 | 1.3e-15 | 56.9 | 1.9e-10 | 1.8e-07 | 30.9 |
| pfu_aug2.0_531.1_04306.t1 | 2 | 2 | zf-B_box | 67 | 107 | 1.3e-15 | 56.9 | 9.6e-11 | 8.9e-08 | 31.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_531.1_04306.t1 | gi|736162974|ref|XP_010793777.1| | PREDICTED: transcription intermediary factor 1-alpha-like isoform X2 [Notothenia coriiceps] | 8.0e-10 |
| pfu_aug2.0_531.1_04306.t1 | gi|736162964|ref|XP_010793761.1| | PREDICTED: transcription intermediary factor 1-alpha-like isoform X1 [Notothenia coriiceps] | 8.0e-10 |
| pfu_aug2.0_531.1_04306.t1 | gi|736162977|ref|XP_010793785.1| | PREDICTED: transcription intermediary factor 1-alpha-like isoform X3 [Notothenia coriiceps] | 9.0e-10 |
| pfu_aug2.0_531.1_04306.t1 | gi|736162985|ref|XP_010793800.1| | PREDICTED: transcription intermediary factor 1-alpha-like isoform X5 [Notothenia coriiceps] | 9.0e-10 |
| pfu_aug2.0_531.1_04306.t1 | gi|736162981|ref|XP_010793793.1| | PREDICTED: transcription intermediary factor 1-alpha-like isoform X4 [Notothenia coriiceps] | 9.0e-10 |
Transcript
| Transcript ID | pfu_aug2.0_531.1_04306.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_531.1_04306.t1 atggcgaccgcgccgtcaatgccaattttacaccaaacaattgttgaatgcgatggctgtgaagctgaaaaagatattac atggtattgtattacttgccgaactaatctttgtgacacttgtaaaacagctagagtacatagaaagcacacgataaagt catggcttgatcctgggtcaataagtgctcgacaggacaatccgattccatgtgcccaacacccggaagaaacgtgtcga aattactgcacaacatgtaaagtgctttcttgtccgatatgtgttgctggtacgcattcaggccatcaatttgagaccct tgataaagttttggaaagaaatcttaattctttgaaaagcaatttagccgagttaaaagacaagttcctaccgaaggcag agcggtcgatacaagagattcaaacgaaaatggatgatggcaagaaaaaatgcgcggaaaataaaactacgataaaactt aaggtagctgcattgacgaagcaattagctgagatggagacaagtctcacggaagcagaggatgaaataaacgagaaata ttcacaagatttgtcgaagcaactcgaagaagccggtatcaagaagaagcgaatttctgatagaatcaaagaaatcgaag atacgatttcaactatgaacaaatcaagcatcataaatgccccgacagagtcctcagatttgacagttttcgaaaccaag gatgttaagacaccatactatccagggtttaaagagacaacttttgtttttccaccttcaggatcaactattggggcttc agaaaaagtcaagggaaaatcagaaaccgaaggcatacaaaatcaggataaaacaggaaccaaggcaaacaaacaaaaac ctccaccacccgataatggagtgagaccaggtgccctggaagaagaccaaagattgaatgaattcagcttcgtacgagaa aaggaaaatgtcggcaaggagtggggcacaattggtccccatcggaattccgacaatttgctgaaagacttttcctccaa acaccacaaaaatgttatcgatcagaaaatttaa |
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Protein
| Protein ID | pfu_aug2.0_531.1_04306.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_531.1_04306.t1 MATAPSMPILHQTIVECDGCEAEKDITWYCITCRTNLCDTCKTARVHRKHTIKSWLDPGSISARQDNPIPCAQHPEETCR NYCTTCKVLSCPICVAGTHSGHQFETLDKVLERNLNSLKSNLAELKDKFLPKAERSIQEIQTKMDDGKKKCAENKTTIKL KVAALTKQLAEMETSLTEAEDEINEKYSQDLSKQLEEAGIKKKRISDRIKEIEDTISTMNKSSIINAPTESSDLTVFETK DVKTPYYPGFKETTFVFPPSGSTIGASEKVKGKSETEGIQNQDKTGTKANKQKPPPPDNGVRPGALEEDQRLNEFSFVRE KENVGKEWGTIGPHRNSDNLLKDFSSKHHKNVIDQKI |
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