Gene
| Gene Model ID | pfu_aug2.0_5187.1_26044 |
|---|---|
| Locus | scaffold5187.1 : 18166 ... 29646 : + |
| To GenomeBrowser | scaffold5187.1:18166..29646 |
| Genes list of scaffold | scaffold5187.1 |
| Synonym | pfu_aug1.0_12204.1_61013 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| tripartite motif-containing protein 45 isoform x2 | GO:0044424 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_5187.1_26044.t1 | 3 | 1 | zf-B_box | 15 | 57 | 3.1e-12 | 46.1 | 5.2e-08 | 9.7e-05 | 22.1 |
| pfu_aug2.0_5187.1_26044.t1 | 3 | 2 | zf-B_box | 73 | 111 | 3.1e-12 | 46.1 | 2.1e-12 | 3.8e-09 | 36.2 |
| pfu_aug2.0_5187.1_26044.t1 | 4 | 1 | NHL | 386 | 402 | 6.9e-08 | 32.0 | 0.0015 | 2.8 | 8.0 |
| pfu_aug2.0_5187.1_26044.t1 | 3 | 3 | zf-B_box | 392 | 401 | 3.1e-12 | 46.1 | 3.9 | 7300.0 | -3.1 |
| pfu_aug2.0_5187.1_26044.t1 | 4 | 2 | NHL | 451 | 459 | 6.9e-08 | 32.0 | 6.5 | 12000.0 | -3.5 |
| pfu_aug2.0_5187.1_26044.t1 | 4 | 3 | NHL | 481 | 503 | 6.9e-08 | 32.0 | 1.6e-06 | 0.003 | 17.4 |
| pfu_aug2.0_5187.1_26044.t1 | 4 | 4 | NHL | 525 | 547 | 6.9e-08 | 32.0 | 0.00089 | 1.7 | 8.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_5187.1_26044.t1 | gi|554530427|ref|XP_005860007.1| | PREDICTED: tripartite motif-containing protein 45 isoform X2 [Myotis brandtii] | 1.0e-11 |
| pfu_aug2.0_5187.1_26044.t1 | gi|554530425|ref|XP_005860006.1| | PREDICTED: tripartite motif-containing protein 45 isoform X1 [Myotis brandtii] | 2.0e-11 |
Transcript
| Transcript ID | pfu_aug2.0_5187.1_26044.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_5187.1_26044.t1 atgagtgataacgctgaagcctatcctacccagatagtggtgacctgtggtatatgtgatggaacaaaagacgttcaatg gttttgtaaatggtgtgcgggatctctttgcaacacatgcaaaatctcacatccaagaatctcaatgttcaagaaccatg tcgttgtaccgcgcactcatgatatcatgcgactgtacgggccgtctaagattgccgagcagtgccccatccataatgac agggagattactacgtactgcaatcagtgtcaggtcccatgctgtgtcaaatgtcaagtagaaaaacacaaccgccatga tatttctaccatcgaggacaagtatctgtctgcagagaacaggcttaacgacaatgtaaaagagctacaaaaagatgtta tgccaaaactggaaaagatgggagaaaagattcagaaagactgctcagaaagaagagttaggcttgaagaggttgataaa gaggtgaacacattcaggaaagaaatgaaggacgctgtcgatgaatcatgtgacggtcttttagaaaaacttcattcaaa agacaacaaatttgataaacaaattatgaaagtagattcacagaaaagaaaagttagggaaatgataaaagagatagatg gaattatacaaaagggtgatttggatatgataaagtactccccgccttctcccacaaccctaatcccctttgtgcctagc ccaaagctttgtattcctgtcttcaaacctgggagggatatattaaccattatcagaagtagggcagggaccatagagtg gactgatgatccttctgaacaaaatgtttctccctccactacgtcagcatttgaccgttctttgatcaatatcgataagg tggacgtcatgtcctttcggagtgaaattgatataacatctattacatcagtaggtaacaacaatgcctgggtcatgtat tgtgaaagtgaaaccatgtatctgtatacccgtagtggtaaagtggagagatctttcacaataaagggctgtggtggcat tgttgacatggcaataagacagtcaggcgaaatgatcgttacctgcgatgatatgaaagtgagatatgtttcgttgaaag gtaatgtgtccattctaattgacacaaaaccttttcatccttacggtatttgcttgtgtgataatgacgagattgtcgtg tgtatgggtggtcagactaagaaacacttagctgtttattctgtatacactggtttgaagcaacgcgaaatattgggaat tgactctcagggtaaccagaagatcacagatccgtactgtgttgaacgtaatggtagcgatatgtgtgtggtcaactggt taaatgtagtatgtgtggatgagaaagatacaataaggtgggtgtatgatggcaaacaggccaaactcaaagaggagttt tctccgcgtggattatgtatagacaagttccacaatctgcttgtcgctgatgtatacaataattgtgtacattacataga tagggatgggaggctattacagataatactaacaaaaggacaaactgggttactgggaccttggggaatcagtctagcag ataacacgggtcaagtctggattggtagtctaaataaacatgctgccatttgtaggtacttatcatcatga |
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Protein
| Protein ID | pfu_aug2.0_5187.1_26044.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_5187.1_26044.t1 MSDNAEAYPTQIVVTCGICDGTKDVQWFCKWCAGSLCNTCKISHPRISMFKNHVVVPRTHDIMRLYGPSKIAEQCPIHND REITTYCNQCQVPCCVKCQVEKHNRHDISTIEDKYLSAENRLNDNVKELQKDVMPKLEKMGEKIQKDCSERRVRLEEVDK EVNTFRKEMKDAVDESCDGLLEKLHSKDNKFDKQIMKVDSQKRKVREMIKEIDGIIQKGDLDMIKYSPPSPTTLIPFVPS PKLCIPVFKPGRDILTIIRSRAGTIEWTDDPSEQNVSPSTTSAFDRSLINIDKVDVMSFRSEIDITSITSVGNNNAWVMY CESETMYLYTRSGKVERSFTIKGCGGIVDMAIRQSGEMIVTCDDMKVRYVSLKGNVSILIDTKPFHPYGICLCDNDEIVV CMGGQTKKHLAVYSVYTGLKQREILGIDSQGNQKITDPYCVERNGSDMCVVNWLNVVCVDEKDTIRWVYDGKQAKLKEEF SPRGLCIDKFHNLLVADVYNNCVHYIDRDGRLLQIILTKGQTGLLGPWGISLADNTGQVWIGSLNKHAAICRYLSS |
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