Gene
| Gene Model ID | pfu_aug2.0_5186.1_22655 |
|---|---|
| Locus | scaffold5186.1 : 1 ... 13045 : - |
| To GenomeBrowser | scaffold5186.1:1..13045 |
| Genes list of scaffold | scaffold5186.1 |
| Synonym | pfu_aug1.0_9363.1_46025 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_5186.1_22655.t1 | 3 | 1 | Ig_2 | 26 | 36 | 7.5e-11 | 42.0 | 5.7 | 8500.0 | -3.1 |
| pfu_aug2.0_5186.1_22655.t1 | 2 | 1 | Ig_3 | 67 | 150 | 2.8e-10 | 40.5 | 4.8e-07 | 0.00071 | 20.0 |
| pfu_aug2.0_5186.1_22655.t1 | 2 | 1 | I-set | 79 | 163 | 6.9e-24 | 83.5 | 2.5e-12 | 3.7e-09 | 36.3 |
| pfu_aug2.0_5186.1_22655.t1 | 2 | 1 | V-set | 80 | 151 | 1.6e-16 | 60.2 | 7.6e-11 | 1.1e-07 | 31.6 |
| pfu_aug2.0_5186.1_22655.t1 | 3 | 2 | Ig_2 | 80 | 164 | 7.5e-11 | 42.0 | 1.2e-07 | 0.00018 | 21.5 |
| pfu_aug2.0_5186.1_22655.t1 | 2 | 1 | ig | 81 | 148 | 1.0e-08 | 35.1 | 8.3e-07 | 0.0012 | 18.8 |
| pfu_aug2.0_5186.1_22655.t1 | 2 | 2 | Ig_3 | 168 | 249 | 2.8e-10 | 40.5 | 3.2e-08 | 4.7e-05 | 23.8 |
| pfu_aug2.0_5186.1_22655.t1 | 2 | 2 | V-set | 177 | 262 | 1.6e-16 | 60.2 | 1.6e-10 | 2.4e-07 | 30.6 |
| pfu_aug2.0_5186.1_22655.t1 | 2 | 2 | I-set | 180 | 262 | 6.9e-24 | 83.5 | 2.5e-15 | 3.7e-12 | 45.9 |
| pfu_aug2.0_5186.1_22655.t1 | 3 | 3 | Ig_2 | 181 | 262 | 7.5e-11 | 42.0 | 5.7e-10 | 8.5e-07 | 29.0 |
| pfu_aug2.0_5186.1_22655.t1 | 2 | 2 | ig | 181 | 247 | 1.0e-08 | 35.1 | 2.7e-07 | 0.00041 | 20.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_5186.1_22655.t1 | gi|637340564|ref|XP_008116406.1| | PREDICTED: LOW QUALITY PROTEIN: titin [Anolis carolinensis] | 2.0e-13 |
| pfu_aug2.0_5186.1_22655.t1 | gi|148921373|dbj|BAF64430.1| | connectin, partial [Gallus gallus] | 3.0e-13 |
| pfu_aug2.0_5186.1_22655.t1 | gi|1513030|dbj|BAA11908.1| | connectin/titin, partial [Gallus gallus] | 5.0e-13 |
| pfu_aug2.0_5186.1_22655.t1 | gi|449507164|ref|XP_004176805.1| | 1.0e-12 |
Transcript
| Transcript ID | pfu_aug2.0_5186.1_22655.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_5186.1_22655.t1 atgatgaacaattttctcttaggatctctgctgatactgaccacactatgttcgggtactgtagcagtaggactcaacaa aaattgtacagtgaatgctaactgtacagaatctgatcccaatacaaagtgctctggtgactctctgtgtgtctgtaatg acaactatgtatacgttacagacaaatgtatcactgtaccaatagtggatatcacagatgatcagtactcacaagttata ggaagcactgccgtcattccttgtgcactatcaggtgataatgccacattagcctactggacctttacagacagcaatgg agaacagaacttaacatctgatggtctgtctaatggtagatacacagtatctgctttatctactcctgatctcaccattt ctacagttaaaacaacagatactggaacatacaaatgtaaagcctctaatgctgctggatggtcatcagatacggcttat cttacagttacagggggtttaccaacagttggcatccaagcacaatattcaaagcttattggagaaaacatcactatctc atgtacagtatctggtacacctgtagttacatcaacagcgtggacgttcacacccacaggaggaagtgaacaaattctga gtgctggaaacagatatacaataactagtggatctggaaacacagaacttaagattatatcacttgtaaaatcagattct gggagttataaatgtaaagctacaaatgctgctggacagttatctaactccactacactaactgttggtggag |
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Protein
| Protein ID | pfu_aug2.0_5186.1_22655.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_5186.1_22655.t1 MMNNFLLGSLLILTTLCSGTVAVGLNKNCTVNANCTESDPNTKCSGDSLCVCNDNYVYVTDKCITVPIVDITDDQYSQVI GSTAVIPCALSGDNATLAYWTFTDSNGEQNLTSDGLSNGRYTVSALSTPDLTISTVKTTDTGTYKCKASNAAGWSSDTAY LTVTGGLPTVGIQAQYSKLIGENITISCTVSGTPVVTSTAWTFTPTGGSEQILSAGNRYTITSGSGNTELKIISLVKSDS GSYKCKATNAAGQLSNSTTLTVGG |
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