Gene
| Gene Model ID | pfu_aug2.0_481.1_04241 |
|---|---|
| Locus | scaffold481.1 : 248566 ... 259616 : + |
| To GenomeBrowser | scaffold481.1:248566..259616 |
| Genes list of scaffold | scaffold481.1 |
| Synonym | pfu_aug1.0_4156.1_01641 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| phosphatidylinositol class a (paroxysmal nocturnal hemoglobinuria) isoform cra_e | GO:0000506 GO:0005515 GO:0005789 GO:0006501 GO:0009893 GO:0016254 GO:0017176 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_481.1_04241.t1 | 1 | 1 | Glyco_transf_4 | 16 | 56 | 3.2e-07 | 30.2 | 1.9e-10 | 5.5e-07 | 29.4 |
| pfu_aug2.0_481.1_04241.t1 | 1 | 1 | Glycos_transf_1 | 77 | 140 | 1.0e-07 | 31.5 | 5.8e-11 | 1.7e-07 | 30.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_481.1_04241.t1 | gi|119619290|gb|EAW98884.1| | phosphatidylinositol glycan, class A (paroxysmal nocturnal hemoglobinuria), isoform CRA_e [Homo sapiens] | 0.0 |
| pfu_aug2.0_481.1_04241.t1 | gi|507575957|ref|XP_004671520.1| | PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase subunit A [Jaculus jaculus] | 0.0 |
| pfu_aug2.0_481.1_04241.t1 | gi|4261860|gb|AAD14160.1|S74936_1 | class A GlcNAc-inositol phospholipid assembly protein [Homo sapiens] | 0.0 |
| pfu_aug2.0_481.1_04241.t1 | gi|426256704|ref|XP_004021977.1| | 5.0e-36 |
Transcript
| Transcript ID | pfu_aug2.0_481.1_04241.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_481.1_04241.t1 atgtacggcattttatttctttcatttcattcttttatttactgtatggtgtcagatttcttctatcctaatatgggagg agtggaaagtcacatttaccaattatcacaatgtcttctagaaagaggtcataaggtcatagttgtcactcatgcctacg gagataggagtggaattcgttacctcacaaatggccttaaggaaaaaaagtggtacgtttccgatggtattggtggagat ggaccaaaaagaattatattagaggaagttagagagaagcatgagctacatgatcgagttcaacttctgggttcactgga gcatagcaaagtcagagatgttctggtacaaggagatataatgataaatgcctcactgacagaagccttctgtatcgcca tagtagaagctgcagcttgtttagttgaatccatcaatcaagcaatctgtgataagaagcaaggaagagctgttccccca tttgaggcccatgagaggataaagaagctgtatacatggagagacgtggccaggagaactgagattgtctataataggga gggcaaaagtccaaataaagccctcacacagagacttgaaagcacagaatatcaatacgatggggacactacttctcatg gcgtagcagacgacctctag |
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Protein
| Protein ID | pfu_aug2.0_481.1_04241.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_481.1_04241.t1 MYGILFLSFHSFIYCMVSDFFYPNMGGVESHIYQLSQCLLERGHKVIVVTHAYGDRSGIRYLTNGLKEKKWYVSDGIGGD GPKRIILEEVREKHELHDRVQLLGSLEHSKVRDVLVQGDIMINASLTEAFCIAIVEAAACLVESINQAICDKKQGRAVPP FEAHERIKKLYTWRDVARRTEIVYNREGKSPNKALTQRLESTEYQYDGDTTSHGVADDL |
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