Gene
| Gene Model ID | pfu_aug2.0_459.1_30797 |
|---|---|
| Locus | scaffold459.1 : 293374 ... 312005 : - |
| To GenomeBrowser | scaffold459.1:293374..312005 |
| Genes list of scaffold | scaffold459.1 |
| Synonym | pfu_aug1.0_913.1_43845 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_459.1_30797.t1 | 3 | 1 | Sulfate_tra_GLY | 71 | 154 | 5.1e-30 | 102.9 | 1.4e-33 | 5.1e-30 | 102.9 |
| pfu_aug2.0_459.1_30797.t1 | 3 | 2 | Sulfate_tra_GLY | 213 | 258 | 5.1e-30 | 102.9 | 0.11 | 400.0 | 0.7 |
| pfu_aug2.0_459.1_30797.t1 | 1 | 1 | Sulfate_transp | 229 | 510 | 0.0 | 230.2 | 0.0 | 0.0 | 229.3 |
| pfu_aug2.0_459.1_30797.t1 | 3 | 3 | Sulfate_tra_GLY | 450 | 469 | 5.1e-30 | 102.9 | 0.44 | 1600.0 | -1.3 |
| pfu_aug2.0_459.1_30797.t1 | 1 | 1 | STAS | 570 | 758 | 5.0e-24 | 83.9 | 4.4e-27 | 1.6e-23 | 82.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_459.1_30797.t1 | gi|556975441|ref|XP_005995355.1| | PREDICTED: prestin [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_459.1_30797.t1 | gi|524982421|ref|XP_005039223.1| | PREDICTED: prestin isoform X1 [Ficedula albicollis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_459.1_30797.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_459.1_30797.t1 atggatccaaaagctagacggacattgctaatggaactgagccgtccacgggaaagttttaggactcaaatgttggtgaa atcaaaggaaaaggtcaagaagagactccagaatcgtataaaggtttcaagtgcttatcaaagagtgagagacaatattc caaagtgcaagtgtactcgagaattatcgcgggctttttgtacagaacttttcccgttttggggagtaatcaaacgttat agtttgaggagatatttactggcagattttgtagctggtatgaccgtgggtatcatacatattccacaaggtatggctta tggattcctcagtaacctccctcctgtatatggtttatacacaagtttcttcccagtgctgctttacttcttcttcgggt catcacagaaaatctcaatgggtacattcgccgtgaccagtttaatgatcggggcagtcgtcactaacggtcttgagaaa tacagacacaccctccccgtggtatcaacaccagagtcaacgaccctgatcaccaaccacacctataatatcaccgtcaa ctccagcgtggagataaccacgccacatgtaatcacggagcaggacgtccacgacgctgagatacagacgaaggtggctt ttgccatgtctgtgtcttttctggctggtctcatgcagtttgccctgggttgttttcggtttggtttcctggcatccttc atgtctgaccccctgatcagtggattcaccactgcggccgctgtccacgtcttctccagccaagtcaagttcctattcgg aatacaagtggctacatatagtggaccattcaaactcatctatttttacagagactttttccagaatctccataacacta accctgtgacggccaccgcctctgtaacttgtatcttcgtgcttatcctcatcaaagaggggatcaacaacaacccaacc tgtaaaaaggacctgcctgtccctataccaatagaacttatggtggtggtggcggcgactgttatatctcactatacccg gataaaccaagagttccaggtggaggtagtgggggtcattcctgttgggttgcctccaccaaatatgaagaaccttgtgt atgcgccagaactgataggggatgccattggcatagcctttgtggcatttgccacatcgtatgccatggcaaaaatcctg gcagagaaaagcaaggaggatatcaatgcaaatcaggagttagtagcaaacgggatatgtaaccttgtaggagctttgtt ctcgtctttctgcagcgccgcctctctgtcccggagtctggtccaagaggaagcaggggggaaaactcagatagttggaa tcttttcatcaattctagtattaatagtgctactatatataggaccgatgtttgccgccctaccaacttgcattttggcg tgtgtagtgatggtgacgctaaagggaatgttcacacaagtcaaagatatgaaaaaactgtggagactgtgtaaacggga tttcgctgtatggttcgtaacgtttatagccactgtgattctagatgtgggccttgggttgatggtgggagttatatttg ctctatattttgtactcagaaatacacagagtccaaatatttgcatgcttggaagagttcccggaacaaacgcttacaaa gacgttaaacttagcagaacgctaatctcagtaccaggaattaaaatatttcgctttgaagccaatttgtactttgccaa cgccgagcaattccgggacaggctgtatgagcgtaccggactaaatcccaaaaaactcaagactaaaaagcaaaaggcgc tgtacaaagccctacttcagaggaaacgtgagcttgaattggcagagatcgagcaacaggccgaggagaagaaaaaacag aaagagctcaagaaaatgagaagctcaattgaggaggaagtggacaaggaaataggtgacgaactaacagaagagcaaga aacgatattaaacaaagacaaaaaggaacttcaaagccgtttctctaaagcatggcttccgcccgttcatacagtagtgc tagatttttcagttgttagttatattgacacagtggcagtcaaagttctttcacagattttagaagagtacaaagaagtt ggtatcaaagtctttttgtctggatgtagagaggatgttcgaaaaataataaagaaagccgacttttatcagtccataga ttacaattgtttgtattttacaatccatgaagccgttgttatagcacaggagctgaacatagacacagagggagaacaat tgagtcatcgtgataaattgctgatcgaagaagagagtaaaaaagcccaggatagacttgcccttaatgaagctacttat actcaaacttcacagaattccacgcggtcaacaccaggggtcagcgaaatagaggtgtga |
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Protein
| Protein ID | pfu_aug2.0_459.1_30797.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_459.1_30797.t1 MDPKARRTLLMELSRPRESFRTQMLVKSKEKVKKRLQNRIKVSSAYQRVRDNIPKCKCTRELSRAFCTELFPFWGVIKRY SLRRYLLADFVAGMTVGIIHIPQGMAYGFLSNLPPVYGLYTSFFPVLLYFFFGSSQKISMGTFAVTSLMIGAVVTNGLEK YRHTLPVVSTPESTTLITNHTYNITVNSSVEITTPHVITEQDVHDAEIQTKVAFAMSVSFLAGLMQFALGCFRFGFLASF MSDPLISGFTTAAAVHVFSSQVKFLFGIQVATYSGPFKLIYFYRDFFQNLHNTNPVTATASVTCIFVLILIKEGINNNPT CKKDLPVPIPIELMVVVAATVISHYTRINQEFQVEVVGVIPVGLPPPNMKNLVYAPELIGDAIGIAFVAFATSYAMAKIL AEKSKEDINANQELVANGICNLVGALFSSFCSAASLSRSLVQEEAGGKTQIVGIFSSILVLIVLLYIGPMFAALPTCILA CVVMVTLKGMFTQVKDMKKLWRLCKRDFAVWFVTFIATVILDVGLGLMVGVIFALYFVLRNTQSPNICMLGRVPGTNAYK DVKLSRTLISVPGIKIFRFEANLYFANAEQFRDRLYERTGLNPKKLKTKKQKALYKALLQRKRELELAEIEQQAEEKKKQ KELKKMRSSIEEEVDKEIGDELTEEQETILNKDKKELQSRFSKAWLPPVHTVVLDFSVVSYIDTVAVKVLSQILEEYKEV GIKVFLSGCREDVRKIIKKADFYQSIDYNCLYFTIHEAVVIAQELNIDTEGEQLSHRDKLLIEEESKKAQDRLALNEATY TQTSQNSTRSTPGVSEIEV |
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