Gene
| Gene Model ID | pfu_aug2.0_459.1_30786 |
|---|---|
| Locus | scaffold459.1 : 49778 ... 68965 : - |
| To GenomeBrowser | scaffold459.1:49778..68965 |
| Genes list of scaffold | scaffold459.1 |
| Synonym | pfu_aug1.0_23339.1_47571 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_459.1_30786.t1 | 8 | 1 | Rad4 | 66 | 66 | 1.1e-20 | 73.5 | 4.0 | 15000.0 | -7.4 |
| pfu_aug2.0_459.1_30786.t1 | 8 | 2 | Rad4 | 119 | 132 | 1.1e-20 | 73.5 | 2.0 | 7300.0 | -3.8 |
| pfu_aug2.0_459.1_30786.t1 | 8 | 3 | Rad4 | 309 | 309 | 1.1e-20 | 73.5 | 4.0 | 15000.0 | -13.9 |
| pfu_aug2.0_459.1_30786.t1 | 8 | 4 | Rad4 | 411 | 427 | 1.1e-20 | 73.5 | 4.0 | 15000.0 | -8.4 |
| pfu_aug2.0_459.1_30786.t1 | 2 | 1 | Transglut_core | 608 | 679 | 8.1e-06 | 26.0 | 3.6e-07 | 0.0013 | 18.8 |
| pfu_aug2.0_459.1_30786.t1 | 8 | 5 | Rad4 | 714 | 714 | 1.1e-20 | 73.5 | 4.0 | 15000.0 | -6.1 |
| pfu_aug2.0_459.1_30786.t1 | 8 | 6 | Rad4 | 805 | 807 | 1.1e-20 | 73.5 | 4.0 | 15000.0 | -5.4 |
| pfu_aug2.0_459.1_30786.t1 | 8 | 7 | Rad4 | 848 | 964 | 1.1e-20 | 73.5 | 2.9e-24 | 1.1e-20 | 73.5 |
| pfu_aug2.0_459.1_30786.t1 | 2 | 2 | Transglut_core | 864 | 884 | 8.1e-06 | 26.0 | 0.014 | 53.0 | 4.0 |
| pfu_aug2.0_459.1_30786.t1 | 1 | 1 | BHD_1 | 970 | 1021 | 7.6e-20 | 70.1 | 5.3e-23 | 2.0e-19 | 68.8 |
| pfu_aug2.0_459.1_30786.t1 | 1 | 1 | BHD_3 | 1055 | 1129 | 7.7e-27 | 92.8 | 4.1e-30 | 1.5e-26 | 91.8 |
| pfu_aug2.0_459.1_30786.t1 | 8 | 8 | Rad4 | 1206 | 1230 | 1.1e-20 | 73.5 | 1.4 | 5400.0 | -3.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_459.1_30786.t1 | gi|224066177|ref|XP_002194725.1| | PREDICTED: DNA repair protein complementing XP-C cells [Taeniopygia guttata] | 0.0 |
| pfu_aug2.0_459.1_30786.t1 | gi|663239691|ref|XP_008498986.1| | PREDICTED: DNA repair protein complementing XP-C cells [Calypte anna] | 0.0 |
| pfu_aug2.0_459.1_30786.t1 | gi|542153134|ref|XP_005485445.1| | PREDICTED: DNA repair protein complementing XP-C cells [Zonotrichia albicollis] | 0.0 |
| pfu_aug2.0_459.1_30786.t1 | gi|686611955|ref|XP_009282697.1| | PREDICTED: DNA repair protein complementing XP-C cells [Aptenodytes forsteri] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_459.1_30786.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_459.1_30786.t1 atggctaaaagaaagcataaaaatggagaagagaaaatagacagtggattgaatcttgtggattctaaacataaagagag aatggtgaggcatcgaaagggaaaagatactaattctgaagataaagatcaaagaaaaaaaggccaaaaaaggagaagtg aagaaacgcctacagttgtaaaagaaaagaagaggaaatcgttacaagaggaaagctcaagtccgggaaagaagtcggat agaaaaggtatgacaaaggaaactaagagaggggatgaaagaaaaagagatggtgttaaactggaggatctaagactagt tgataccacagtcacaaaaaatgatcgcgggtcacaagttaagaaaagtaggaataaagacaagaaaagtcaatcagtta cagagatacaagatgataaaacagatcttaggaaggaaacaggttcaaattctcaaacaaactcacacatcaaagaagaa ttcacacaatgtacggctaatggaatgtcacaaattcatgaagtaaacttaaaggagtgtgataacaaaggatacaatat tgagtcggtagatgttaaaaacaagccagatatcgatgatgaggtaggaataatgtctgactccgaggattcggattttg aacctaatgagaagattttttcatcaaaggcagctaaaaagaaggagacaggtccacaagaaaagttcaaactacatgta gataaaacttcatcaagaaagtccaattcaggtgaaagtacatctcaaaggtccaaatcaggtgaaagtacatctcagag gtctaaatcaggtgaaagtacatctcaaaggtccaaatcaggtgaaagtacatctcagaggtctaaatcaggtgaaagta catctcagaggtctaaatcaggtgaaagtacatctcagaggtctaaatcaggtgaaagtacatctcagaggtctaaatca ggtgaaaatttatctcagaggtccaaattaggtgaaaatacatctcagaagtcaaaatcagttgaaagtagatctcgcaa gtcaaaatcaggtgaaagaataactgcaaagtccaaatcaggacagagaaaagagaacgcaaagaatgatgaaacggtgt ctagtgcaaagaaacctaaattatcagagaaaacagatactgaaatacattctaaaggaaagaaagtgattaatacagaa aaagagagtaagaaaacatctaaaacgcccaaaagacggaaggagatggagaaaactaagaagtccaaacacaatgaaaa gcatagtacaagtaaagaacgtaaagatgaaaggaaaagtgattttgtttctgcaaacgctgatcagagagatgtcatgt ctcttctgctacagatggaaggaggcagtatgtatcagaccggaaatgatgttaggccaggtgggtctgggatggagact gctgctttccatgatgatgatagtgatgaattaggcagtgatgaagatgagtcagattgggaagaagttgaagacgatcc acgccacaagagtcccaaaaagtctcagattccaacagagcctgtccaggtcacaatagatgctccagatttcataaaga aaaggaaaaagaaggaatttgatatgaatgcatatatcaaacgtcagatgaacaggtttcaaagggagcttagagaagac atccacaaggttcatttaatgctgctgttggcagggggaatgtacttgaacaggatctgtaatgacgtgaccctacaagc tgttaccctgtccatcattcctaaggaatacatacatacgtcaccatccaggtacaacttcagctccgtggagaggctga tgacttggtactcggctacagtcagcatggactcgtcactggatgtacaggatgatttgagatcaacccttgtgaaaaga ctggaggacagaaaagttgcctctaccttggaatatgtactgatatttgtagccttattgagatgtatcgggatacaaac caggctcaccctttcactacaaccattacctatcaaagcatcagggaaaacaggtggaaaggcatcaacacaaaagaagg ctatcaaagacaagcaatcagctagtcaaaaaaatcaaaataaggttgagaaaggtagaaacaatgaatcaaaacctcaa tgtggaaaaagcacaaagacattatcaaaagaggagaaaaaaggcaaagaaagttcaaagttgcctgcaaaagtcaagga caatagaaacaaatctttagtgaggaattcttccaaagggaaagctcttagaaagagagggagtattgtgaattataaag tagagagtggtagtgacaatgaggagtctgaggaggaatatactccagaggaggaggacagtgaggaagggaagaaggac aggaggagcagaaataaatcaggcaaaggaaagagtagctccaagaaagcaaagagttgtaggaatgatgaatccgaaga tgactttgaagagaatgtaaaagaatatagaacgccaatcaataaatcagtattgatgaagaaatccagtactaataaga aaatattgtcatctgactctgaagtcgacaccagtgaacaaggtgtggatcactgggtggaagtgtatctggagaataaa tggatatgtgttaactgccttcacaagcagcttaacagaccatacaggctggagagtggttctacacaaccagtacatta tgttgtcacttactttcaagatggaagtttaaaggacgtcacggcacgttatgcctctaattggatgacagacactcgaa aactacgcacagaccctggatggtgggaggataccattaacccttacagaccactaaatgtcaagtttgatgaaaaagag gacagtgaaatcaaagtatccctgatgagaagaccaatgccaacttctatagcagcttttaagagtcacccactatatgc cttgagaagacatttattgaagtttgaagctatttacccagacagtgcggctcccttgggatttgtacggggagaacctg tgtatgccagggaatgtgttcatgagaacagacctaaagaaaatccagatgcccttgaccttgagttatttgggttatgg caaacagaacaatacatgcccccacctgctgtagatggtaaagtaccaaagaatgaatatgggaatcttgaactcttcaa gccttgtatgctgcctgctggaacagtgcacctacaaattccgggcttgaacaaagtagcaaagaaacttaatatagact gtgtacctgcaatggttggatgggatacacattgtggctttcctgtgcccttacttgatggttttgttgtatgtgaggaa cataaggagaccttgatggctgcttgggaagaggaccaagaaatacagaaacagagggaggcagagaaaagggagaagag agtgttaaacaattggaaagtattaattaaaggccttctgatcaaagacagactcaagaaaagatttgacttacaggagc aggaaaacaaaggggatctatgtgaggaggagaccaaaaaatttgctggcagtgagaaggctacagatgctgagctttca tggccaagaaaacaacaagagcaaagagctaagaagacaaaggggaaaagctctacctctacttcaaatgataataactc tacctcagctcattatgaagtagaaaccttgtag |
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Protein
| Protein ID | pfu_aug2.0_459.1_30786.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_459.1_30786.t1 MAKRKHKNGEEKIDSGLNLVDSKHKERMVRHRKGKDTNSEDKDQRKKGQKRRSEETPTVVKEKKRKSLQEESSSPGKKSD RKGMTKETKRGDERKRDGVKLEDLRLVDTTVTKNDRGSQVKKSRNKDKKSQSVTEIQDDKTDLRKETGSNSQTNSHIKEE FTQCTANGMSQIHEVNLKECDNKGYNIESVDVKNKPDIDDEVGIMSDSEDSDFEPNEKIFSSKAAKKKETGPQEKFKLHV DKTSSRKSNSGESTSQRSKSGESTSQRSKSGESTSQRSKSGESTSQRSKSGESTSQRSKSGESTSQRSKSGESTSQRSKS GENLSQRSKLGENTSQKSKSVESRSRKSKSGERITAKSKSGQRKENAKNDETVSSAKKPKLSEKTDTEIHSKGKKVINTE KESKKTSKTPKRRKEMEKTKKSKHNEKHSTSKERKDERKSDFVSANADQRDVMSLLLQMEGGSMYQTGNDVRPGGSGMET AAFHDDDSDELGSDEDESDWEEVEDDPRHKSPKKSQIPTEPVQVTIDAPDFIKKRKKKEFDMNAYIKRQMNRFQRELRED IHKVHLMLLLAGGMYLNRICNDVTLQAVTLSIIPKEYIHTSPSRYNFSSVERLMTWYSATVSMDSSLDVQDDLRSTLVKR LEDRKVASTLEYVLIFVALLRCIGIQTRLTLSLQPLPIKASGKTGGKASTQKKAIKDKQSASQKNQNKVEKGRNNESKPQ CGKSTKTLSKEEKKGKESSKLPAKVKDNRNKSLVRNSSKGKALRKRGSIVNYKVESGSDNEESEEEYTPEEEDSEEGKKD RRSRNKSGKGKSSSKKAKSCRNDESEDDFEENVKEYRTPINKSVLMKKSSTNKKILSSDSEVDTSEQGVDHWVEVYLENK WICVNCLHKQLNRPYRLESGSTQPVHYVVTYFQDGSLKDVTARYASNWMTDTRKLRTDPGWWEDTINPYRPLNVKFDEKE DSEIKVSLMRRPMPTSIAAFKSHPLYALRRHLLKFEAIYPDSAAPLGFVRGEPVYARECVHENRPKENPDALDLELFGLW QTEQYMPPPAVDGKVPKNEYGNLELFKPCMLPAGTVHLQIPGLNKVAKKLNIDCVPAMVGWDTHCGFPVPLLDGFVVCEE HKETLMAAWEEDQEIQKQREAEKREKRVLNNWKVLIKGLLIKDRLKKRFDLQEQENKGDLCEEETKKFAGSEKATDAELS WPRKQQEQRAKKTKGKSSTSTSNDNNSTSAHYEVETL |
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