Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_459.1_30782
Locus scaffold459.1 : 2844 ... 13616 : +
To GenomeBrowser scaffold459.1:2844..13616
Genes list of scaffold scaffold459.1
Synonym pfu_aug1.0_1637.1_58609

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_459.1_30782.t1 1 1 Bile_Hydr_Trans 52 188 6.2e-32 109.9 6.4e-35 1.1e-31 109.2
pfu_aug2.0_459.1_30782.t1 1 1 Abhydrolase_5 219 388 1.1e-06 28.4 1.3e-09 2.1e-06 27.5
pfu_aug2.0_459.1_30782.t1 1 1 BAAT_C 249 444 7.6e-29 100.9 6.9e-32 1.1e-28 100.3

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_459.1_30782.t1 gi|594700139|ref|XP_007197143.1| PREDICTED: acyl-coenzyme A amino acid N-acyltransferase 2-like isoform X2 [Balaenoptera acutorostrata scammoni] 0.0
pfu_aug2.0_459.1_30782.t1 gi|593761341|ref|XP_007119351.1| PREDICTED: acyl-coenzyme A amino acid N-acyltransferase 2-like [Physeter catodon] 0.0
pfu_aug2.0_459.1_30782.t1 gi|594700137|ref|XP_007197142.1| PREDICTED: acyl-coenzyme A amino acid N-acyltransferase 2-like isoform X1 [Balaenoptera acutorostrata scammoni] 0.0

Transcript
Transcript IDpfu_aug2.0_459.1_30782.t1
Definition-
>pfu_aug2.0_459.1_30782.t1
atgttcagtcagacatgcagaaatgtattttcttcgagatttttgcctgctatgaaagtgatcatacgaaatacatctaa
caccacaatgcattcagatgctgccagtctacttgccataccccatatttctgtaacaccagagaatgctctgatagatg
ataaactgtatatacgtgtaagtggcctgcaaaaatatcagaatgtcactcttttgaacaaagtggcagataatggaatc
agatttgcatcgagcggctgctttagagctaataatgaagggattgtggatgtttctcaggatgaatgtttacagggaac
atataagggtaaagatgctatggggttgttctggagtctaaaaccagagcctgggtacgagaacaagagattgttgaaag
acgatgtctctactcctttggtgttccatgtgttagtatatgatggaatgtattcatgggaagaactacataagaaaagt
tctacattggaacccctgaattcaacagaaattaatcgctggtacaagtctccagatgtaaaaaggatcgatatacatga
aggaaatctcaggggtgcattgtttattccaaaaggtacaggtcccttcccagccattattgacatgtttggaggtatcg
gtggattggtggagaccagggctgcactgtttgcctccaggggattcctgactctagcacttgcctactttaattacaaa
gatcttcctgtgaatttctatgatgtccattatccttattttctggaggcagcatcctggatgtacaaccatcctctggc
catgcctggggggataggaacagtgggtgtgtcttatggaggagtgttctcagctagtatggcaacattccttaaagagg
ttgtagcagcagttgtgataaattccccaccatacatgcctgatccaaaaagaataccagatttagtaaaggaatcagtg
atgcatcaaattgtggatttgaaaagactggaaaagtcagaagaggggttggtaatgaagttctgttatgttcatcatga
agagtatattatcaaggcttgggaatcagatgccaagtatctatgtttagtgggcgaggatgatcagtgtttagacagct
catacatggattattggtattctaaatggccttcagatcagagacataaagtagaatatataaaatatcctgacacggct
tattcaccactttacaggaccactgcaatacgaactccatttaaaggtttatgtttttggggagggacaccagagggcca
tgcccatgctcaggaggattcctggaggagaattctggatttccttcacactaatgtcccagtgaaaagtaaacaaacaa
tcaaaagtcagttgtga

Protein
Protein IDpfu_aug2.0_459.1_30782.t1
Definition-
>pfu_aug2.0_459.1_30782.t1
MFSQTCRNVFSSRFLPAMKVIIRNTSNTTMHSDAASLLAIPHISVTPENALIDDKLYIRVSGLQKYQNVTLLNKVADNGI
RFASSGCFRANNEGIVDVSQDECLQGTYKGKDAMGLFWSLKPEPGYENKRLLKDDVSTPLVFHVLVYDGMYSWEELHKKS
STLEPLNSTEINRWYKSPDVKRIDIHEGNLRGALFIPKGTGPFPAIIDMFGGIGGLVETRAALFASRGFLTLALAYFNYK
DLPVNFYDVHYPYFLEAASWMYNHPLAMPGGIGTVGVSYGGVFSASMATFLKEVVAAVVINSPPYMPDPKRIPDLVKESV
MHQIVDLKRLEKSEEGLVMKFCYVHHEEYIIKAWESDAKYLCLVGEDDQCLDSSYMDYWYSKWPSDQRHKVEYIKYPDTA
YSPLYRTTAIRTPFKGLCFWGGTPEGHAHAQEDSWRRILDFLHTNVPVKSKQTIKSQL

  • MGU Home
  • Genome Projects
  • Information
  • Genome Browser
  • Blast Search
  • Keyword Search
  • Downloads

Gene ID:



Keyword:



  • Login

copyright © Marine Genomics Unit 2015
Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495