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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_4073.1_12581
Locus scaffold4073.1 : 43577 ... 44305 : -
To GenomeBrowser scaffold4073.1:43577..44305
Genes list of scaffold scaffold4073.1
Synonym NA

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_4073.1_12581.t1 2 1 DUF4326 7 68 7.4e-14 52.0 1.0e-17 7.4e-14 52.0
pfu_aug2.0_4073.1_12581.t1 2 2 DUF4326 102 130 7.4e-14 52.0 0.19 1400.0 -0.1

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_4073.1_12581.t1 gi|470511612|ref|XP_004351685.1| hypothetical protein ACA1_398940 [Acanthamoeba castellanii str. Neff] 2.0e-07

Transcript
Transcript IDpfu_aug2.0_4073.1_12581.t1
Definition-
>pfu_aug2.0_4073.1_12581.t1
atgggaagtattgtgggcaacaaatggagcaatccttatacctgtcaccctaggatgggagctaaagaattccagaaatg
catgaggctatatgaacagcatatcagagacaacttatggaacaatttacacgaattgaaagggaagactctgggttgct
ggtgctacccctatccgtgtcatgcagacattttaaaaaggctgtatgaggagatgatgtccaagaggttggaggaggac
gagaaggctgctagctggttggaatggaagaaggttagtttttctgacgatgtacaagtcattgacgacgaggaaatgtc
gcaagtattcgatgagaagatggatgaaagaacacaggaagacaagatggcggccgatagactcgtcgaaatcatggaag
aagaggacaggaagaaggaagggaagaagagaatgtttggatcatcgttcggacaatataaaataaagaaggattacgga
ggttgtgtatgcctagttaggaaaagaccatctgtcgctaagaaggaactatctatttctaaagagccgcccatggcctt
aaaaactgattatgattttgatatgaatgaatttttacatcctaagaaaaagaagaaaataaagaaagattaa

Protein
Protein IDpfu_aug2.0_4073.1_12581.t1
Definition-
>pfu_aug2.0_4073.1_12581.t1
MGSIVGNKWSNPYTCHPRMGAKEFQKCMRLYEQHIRDNLWNNLHELKGKTLGCWCYPYPCHADILKRLYEEMMSKRLEED
EKAASWLEWKKVSFSDDVQVIDDEEMSQVFDEKMDERTQEDKMAADRLVEIMEEEDRKKEGKKRMFGSSFGQYKIKKDYG
GCVCLVRKRPSVAKKELSISKEPPMALKTDYDFDMNEFLHPKKKKKIKKD

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