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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_4.1_13340
Locus scaffold4.1 : 563778 ... 567960 : -
To GenomeBrowser scaffold4.1:563778..567960
Genes list of scaffold scaffold4.1
Synonym pfu_aug1.0_39304.1_19717

Manual annotation
Annotation by Blast2GO
Annotation GO
dna primase large subunit-like GO:0003896 GO:0006269

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_4.1_13340.t1 2 1 DNA_primase_lrg 15 167 0.0 180.5 0.0 1.19951e-42 146.0
pfu_aug2.0_4.1_13340.t1 2 2 DNA_primase_lrg 179 213 0.0 180.5 2.1e-12 3.2e-08 33.1

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_4.1_13340.t1 gi|641797438|ref|XP_008161992.1| PREDICTED: DNA primase large subunit isoform X2 [Chrysemys picta bellii] 0.0
pfu_aug2.0_4.1_13340.t1 gi|676482167|ref|XP_009062610.1| hypothetical protein LOTGIDRAFT_128625 [Lottia gigantea] 0.0
pfu_aug2.0_4.1_13340.t1 gi|742177820|ref|XP_010887300.1| PREDICTED: DNA primase large subunit isoform X2 [Esox lucius] 0.0
pfu_aug2.0_4.1_13340.t1 gi|524886893|ref|XP_005100037.1| PREDICTED: DNA primase large subunit-like [Aplysia californica] 0.0
pfu_aug2.0_4.1_13340.t1 gi|291240166|ref|XP_002739991.1| PREDICTED: DNA primase large subunit-like [Saccoglossus kowalevskii] 0.0

Transcript
Transcript IDpfu_aug2.0_4.1_13340.t1
Definition-
>pfu_aug2.0_4.1_13340.t1
atggcagccggaggtaggaatgccgcaaccatggacacacaggaattcttcaaggtgcccttcacggaagtatttgactt
gattcagcgtcggagggtgttcctgagtagaggatatgcttttgtacccagagatgatcttgtatctatagtcatcactc
actacagaactcaactctcacatgctttagctatgacttcacgagcgttacctcatcttgaagaagacaacagactgctg
ccgatgttatctggtctcagtaagcggtacttaggagaggattatgggacaaagaagaataatgccggtcaagtgacggc
cgatatgattgatatgctttcccggcagtcttttcctctatgcatgcagcagctacatcaagcatgtcgtcgtgaccatc
acttacggcacgggggtcgacagcagtatggactcttccttaaaggtataggactgtcactggaggaagccatgaagttc
tggaaaactgaattcatgaaaatgatggatggggataaggcaatatcctttgtgaaaggaggtcactaccagcttgcctg
taaaagttattttgaagccacccacccacccctacctgatggagaggacattagtataaaccatcctaatcaatactttg
atgaaagtcgaagggtcctcagtggagagaaaaaggaaggatccagactgtcccagccccctagaactcctgcctctaag
tctacccagccatcacagaacactccccagtcacagtccagtaaccctacccagactcaaggtgcaccatcgtcacagat
cagcgaactcggggaaatggaagacgatgatgacctactggcaagcatggaaacttag

Protein
Protein IDpfu_aug2.0_4.1_13340.t1
Definition-
>pfu_aug2.0_4.1_13340.t1
MAAGGRNAATMDTQEFFKVPFTEVFDLIQRRRVFLSRGYAFVPRDDLVSIVITHYRTQLSHALAMTSRALPHLEEDNRLL
PMLSGLSKRYLGEDYGTKKNNAGQVTADMIDMLSRQSFPLCMQQLHQACRRDHHLRHGGRQQYGLFLKGIGLSLEEAMKF
WKTEFMKMMDGDKAISFVKGGHYQLACKSYFEATHPPLPDGEDISINHPNQYFDESRRVLSGEKKEGSRLSQPPRTPASK
STQPSQNTPQSQSSNPTQTQGAPSSQISELGEMEDDDDLLASMET

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