Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_390.1_00688
Locus scaffold390.1 : 288983 ... 313166 : -
To GenomeBrowser scaffold390.1:288983..313166
Genes list of scaffold scaffold390.1
Synonym pfu_aug1.0_8229.1_24357

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_390.1_00688.t1 2 1 Fibrinogen_C 247 435 0.0 215.0 0.0 0.0 177.3
pfu_aug2.0_390.1_00688.t1 2 2 Fibrinogen_C 431 491 0.0 215.0 2.9e-15 1.1e-11 44.8

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_390.1_00688.t1 gi|260797355|ref|XP_002593668.1| hypothetical protein BRAFLDRAFT_252156 [Branchiostoma floridae] 0.0
pfu_aug2.0_390.1_00688.t1 gi|260797347|ref|XP_002593664.1| hypothetical protein BRAFLDRAFT_252175 [Branchiostoma floridae] 1.4013e-45
pfu_aug2.0_390.1_00688.t1 gi|340383203|ref|XP_003390107.1| PREDICTED: ryncolin-4-like [Amphimedon queenslandica] 2.94273e-44
pfu_aug2.0_390.1_00688.t1 gi|260797367|ref|XP_002593674.1| hypothetical protein BRAFLDRAFT_108089 [Branchiostoma floridae] 5.99756e-43

Transcript
Transcript IDpfu_aug2.0_390.1_00688.t1
Definition-
>pfu_aug2.0_390.1_00688.t1
atggttaacagttgttacttcgacaacaatgcaacactggaaacgcgggaaaaacgatatttggcgggaaaaaccatcgt
ttcaaatgaaatcataggatctcagatgtgtgtaaaggaatgtctcagaagaaattgtaaatcgataaactttaataaag
atctacttcagtgtacactgaattcgaatgatgacgatagtccacaagaggggtcctcattacacgaagattctgatttc
accttcattaatgttactcgttggtcaccaaatgagttagaagaaatagcatcacaatctccagatatcaacgttacaca
agataactatgtttgtgtaacattgaagtcgaagaagatcgcttgtgttaaagatgggaaaagatacttagtttctgact
tcaacttcacttacagatacatagacgaagtgttgttcatcaataatccaaaattcgcggattacctcagcagtatctat
ccttcggagcttgaggtcaaagaaactacagagacaaataatccagcttcctatttggacataatgttgtccatcgacac
tgatggtcacatgaacatctcactctatgacaaacgtgacgacttcaatttcagcattacaaattttcctttcctgagta
gctacattccttcatcgcctgcttatgacgtgttcatatctcagttgatacgctatgccagaacaagtaccaaatatacg
gattatcgttctgagagaccacgtgattgtggggatatttatacccgtggaggaagaaatagtggagtcttcatcctgta
ccctacagatggcagtgataattttacaaaggcatactgtgacatagacaacaccggagggtggaccgtatttcaaagga
gacaaaatgggcaaactgattttaaaagatcttggaatgaatacagagatagatttggtgacccagcagacgagtactgg
ctaggtaacctgtacttgcatcaactcactcaaggcaggagctgtcaattaagggtagaattcatacgccggaacgataa
tacgggatacgcaaattacacagtttttgaggtggcaaatgaagacgaaaaattcaagttgaagataagcggttactcag
gagatcaaggagatggtatgtccacggctaacggcattggctttacaacttatgacgccgacaatgacatccaaccgaat
gtcaactgtgctgtagcccactcaggtgcgtggtggcactctgattgcgggaacaccaatctgaatggagattactcttt
tgatgatggatatggagatggtatgtccacggctaacggcattggctttacaacttatgacgccgacaatgacatccaac
cgaatgtcaactgtgctgtagcccactcaggtgcgtggtggcactctgattgcgggaacaccaatctgaatggagattac
tcttttgatgatggatatgttcaacaactcaataaaaccacaccaacagttcaacaactcaatataacgacaccaacagt
tcaacaactcaatataaccacagcaatagtccaacaactcaatataacgacaccaacagttcaacaactcaatataacca
caccaacagtccaacaactcaatataaccataccaacagatcaacaactcaatataacgacaccaacagttcaacaactc
aatataaccacaacaacagttcaacaactcaatataacgacaccaacagttcaacaactcaatataaccacaccaacagt
ccaacaactcaatataacgacaccaacagttcaacaactcaatataaccacagcaacagtccgacaacacaacaacccaa
tataa

Protein
Protein IDpfu_aug2.0_390.1_00688.t1
Definition-
>pfu_aug2.0_390.1_00688.t1
MVNSCYFDNNATLETREKRYLAGKTIVSNEIIGSQMCVKECLRRNCKSINFNKDLLQCTLNSNDDDSPQEGSSLHEDSDF
TFINVTRWSPNELEEIASQSPDINVTQDNYVCVTLKSKKIACVKDGKRYLVSDFNFTYRYIDEVLFINNPKFADYLSSIY
PSELEVKETTETNNPASYLDIMLSIDTDGHMNISLYDKRDDFNFSITNFPFLSSYIPSSPAYDVFISQLIRYARTSTKYT
DYRSERPRDCGDIYTRGGRNSGVFILYPTDGSDNFTKAYCDIDNTGGWTVFQRRQNGQTDFKRSWNEYRDRFGDPADEYW
LGNLYLHQLTQGRSCQLRVEFIRRNDNTGYANYTVFEVANEDEKFKLKISGYSGDQGDGMSTANGIGFTTYDADNDIQPN
VNCAVAHSGAWWHSDCGNTNLNGDYSFDDGYGDGMSTANGIGFTTYDADNDIQPNVNCAVAHSGAWWHSDCGNTNLNGDY
SFDDGYVQQLNKTTPTVQQLNITTPTVQQLNITTAIVQQLNITTPTVQQLNITTPTVQQLNITIPTDQQLNITTPTVQQL
NITTTTVQQLNITTPTVQQLNITTPTVQQLNITTPTVQQLNITTATVRQHNNPI

  • MGU Home
  • Genome Projects
  • Information
  • Genome Browser
  • Blast Search
  • Keyword Search
  • Downloads

Gene ID:



Keyword:



  • Login

copyright © Marine Genomics Unit 2015
Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495