Gene
| Gene Model ID | pfu_aug2.0_390.1_00687 |
|---|---|
| Locus | scaffold390.1 : 249763 ... 271380 : + |
| To GenomeBrowser | scaffold390.1:249763..271380 |
| Genes list of scaffold | scaffold390.1 |
| Synonym | pfu_aug1.0_9115.1_53284 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| cysteine--trna cytoplasmic-like isoform x2 | GO:0000049 GO:0004817 GO:0005524 GO:0005829 GO:0006423 GO:0042803 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_390.1_00687.t1 | 1 | 1 | tRNA-synt_1e | 1 | 387 | 0.0 | 376.5 | 0.0 | 0.0 | 375.4 |
| pfu_aug2.0_390.1_00687.t1 | 3 | 1 | tRNA-synt_1g | 1 | 30 | 1.3e-06 | 27.3 | 0.016 | 49.0 | 2.4 |
| pfu_aug2.0_390.1_00687.t1 | 3 | 2 | tRNA-synt_1g | 185 | 229 | 1.3e-06 | 27.3 | 0.2 | 600.0 | -1.2 |
| pfu_aug2.0_390.1_00687.t1 | 3 | 3 | tRNA-synt_1g | 328 | 400 | 1.3e-06 | 27.3 | 6.9e-09 | 2.1e-05 | 23.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_390.1_00687.t1 | gi|26328991|dbj|BAC28234.1| | unnamed protein product [Mus musculus] | 0.0 |
| pfu_aug2.0_390.1_00687.t1 | gi|676433029|ref|XP_009046766.1| | hypothetical protein LOTGIDRAFT_237933 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_390.1_00687.t1 | gi|585679800|ref|XP_006819585.1| | PREDICTED: cysteine--tRNA ligase, cytoplasmic-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_390.1_00687.t1 | gi|542239915|ref|XP_005457464.1| | PREDICTED: cysteine--tRNA ligase, cytoplasmic-like isoform X2 [Oreochromis niloticus] | 0.0 |
| pfu_aug2.0_390.1_00687.t1 | gi|348530284|ref|XP_003452641.1| | PREDICTED: cysteine--tRNA ligase, cytoplasmic-like isoform X1 [Oreochromis niloticus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_390.1_00687.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_390.1_00687.t1 atgggccatgcaaggacatacatttcctttgacattctacggagggttatgagggattacttcaactacgatgtatttta ctgtatgaatataacagatattgatgacaagatcatcaaacgagcaaggataaatttcctatgggacaaatatgtccaag atggccaccctctatcacaagttctcatagatatacatgaagcaatgaagcctttcacagtaaagctgcagaatgagaca gacccagataaaaaggtcatgttggacaagatgagggtaagggtggaaggagggctgaaagatgtggaaacaaaaatgaa taacggcccagtatcagacgaaggcaaagcaaaagaggatttgctgagttcctccagagacgtgctctgtgattggctgg ataggctacatgggtcagaggtcacagacaactccatattttcaaagttaccacaattctatgaggcagactaccacaaa gacatggaaaatcttaatgttctccctgcagatgtactgacaagggtcagtgaatacgtaccggagattgtggactacgt acagaaaatcatcgataatggatatgcatatgaatctcgtggctcagtgtatttcgacactgccaaatttgatgctgctc ccaaccaccactacgccaagctggtaccagaggcgtacggtgacaaaaaggctctcaatgagggggaaggtgaactgagt gtatcagaagataggttagaggagaagagaagtactaatgattttgctctgtggaaagcatctaaaccaggtgaacctag ctgggattcaccctggggcaaggggagaccaggttggcatattgaatgctctgtaatggcaagcagcatattgggacagt ccatggatatccattcaggaggatttgatctgcagttccctcatcatgataatgaacttgcccaagcagaggccttctat gagaatgaccattgggtgcggtacttcttacacactggacatttgaccatcgaaggctgcaagatgtccaagtccctcaa aaacttcatctccataaaagatgcactaggcaagcacaccccacgacaaattcggttcttatttttactgcatcagtgga aggacactctagattatggctcaaacagcatggaaatagccaccaagtacgagaaaatggtcaatgaattcttcttgaac gtaaaaagtctgttaaggaatacccccagtacagggatagaagctttcgagaaatggaataaggaagaagtggatctcaa tgaaaggtttgcagagacaaagtctggtgtacatgaagcactctgtgataatgtaaacacaaggttagcgttacagaaat tacaagacatgattgggtctacaaatatttacatgcagaggttcaaatctgtgtcagggtttgaggcaggaagaccgaat agaatgcttctacaaaatatcgcagactacattacaaaactgttcaaggtatttggtgcaatagagacctcagatgaagt aggctttccccagggtggggctaaggccacaaacacagaggaaatagtcatgccctacctagaagccttcgctgatttca gggaaaaggtcagaaaagcatccatggaacagaaagttattcctgttttaaaactgtgtgatgaagtgagggacgaaacc ctccccaacctcggggtcagattggaggacaccggaactccacccacaatcaaacttgtcgacaaggaaactctgctgaa ggaaaaggctgaaaaacaaaggcaagaggaacagaagcggttggaaaaagaaagaaagaaaaaggaacaggctgagaagg aggcagctaaggaagcccaggacagaataccaccatctgaactcttcagaaaggagacagataaatattctaagtttgat gagaagggaatacccactcatgatgctgaagggaaggaattaccgaaatctgccataaagaaactgatgaagcagtatga tgctcaagataaacggcaccaaaaatatttagcgagtaaaagttaa |
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Protein
| Protein ID | pfu_aug2.0_390.1_00687.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_390.1_00687.t1 MGHARTYISFDILRRVMRDYFNYDVFYCMNITDIDDKIIKRARINFLWDKYVQDGHPLSQVLIDIHEAMKPFTVKLQNET DPDKKVMLDKMRVRVEGGLKDVETKMNNGPVSDEGKAKEDLLSSSRDVLCDWLDRLHGSEVTDNSIFSKLPQFYEADYHK DMENLNVLPADVLTRVSEYVPEIVDYVQKIIDNGYAYESRGSVYFDTAKFDAAPNHHYAKLVPEAYGDKKALNEGEGELS VSEDRLEEKRSTNDFALWKASKPGEPSWDSPWGKGRPGWHIECSVMASSILGQSMDIHSGGFDLQFPHHDNELAQAEAFY ENDHWVRYFLHTGHLTIEGCKMSKSLKNFISIKDALGKHTPRQIRFLFLLHQWKDTLDYGSNSMEIATKYEKMVNEFFLN VKSLLRNTPSTGIEAFEKWNKEEVDLNERFAETKSGVHEALCDNVNTRLALQKLQDMIGSTNIYMQRFKSVSGFEAGRPN RMLLQNIADYITKLFKVFGAIETSDEVGFPQGGAKATNTEEIVMPYLEAFADFREKVRKASMEQKVIPVLKLCDEVRDET LPNLGVRLEDTGTPPTIKLVDKETLLKEKAEKQRQEEQKRLEKERKKKEQAEKEAAKEAQDRIPPSELFRKETDKYSKFD EKGIPTHDAEGKELPKSAIKKLMKQYDAQDKRHQKYLASKS |
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