Gene
| Gene Model ID | pfu_aug2.0_385.1_17361 |
|---|---|
| Locus | scaffold385.1 : 86308 ... 110875 : - |
| To GenomeBrowser | scaffold385.1:86308..110875 |
| Genes list of scaffold | scaffold385.1 |
| Synonym | pfu_aug1.0_12869.1_10523 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| calsyntenin-1 isoform x2 | GO:0016020 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_385.1_17361.t1 | 2 | 1 | Cadherin | 71 | 151 | 3.9e-11 | 43.0 | 2.2e-07 | 0.0011 | 19.2 |
| pfu_aug2.0_385.1_17361.t1 | 2 | 2 | Cadherin | 172 | 255 | 3.9e-11 | 43.0 | 5.6e-08 | 0.00027 | 21.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_385.1_17361.t1 | gi|524867003|ref|XP_005090315.1| | PREDICTED: calsyntenin-1-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_385.1_17361.t1 | gi|676454128|ref|XP_009053579.1| | hypothetical protein LOTGIDRAFT_116621 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_385.1_17361.t1 | gi|242018096|ref|XP_002429517.1| | Calsyntenin-1 precursor, putative [Pediculus humanus corporis] | 0.0 |
| pfu_aug2.0_385.1_17361.t1 | gi|642926068|ref|XP_008194752.1| | PREDICTED: calsyntenin-1 [Tribolium castaneum] | 0.0 |
| pfu_aug2.0_385.1_17361.t1 | gi|270009292|gb|EFA05740.1| | hypothetical protein TcasGA2_TC015622 [Tribolium castaneum] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_385.1_17361.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_385.1_17361.t1 atgagaagtgatcacagcggaacacacgcgtatgattacaagataaggaaagatccccaacatgacggcgttacagtgat cacagcggaacacacacagcccaatgcatatgacccagtcatagattccaagtataaaaatgggcgtggcattccagttt tccatggtaacatatcagagcagggtaaggaggtcgttctggatccacccctgacagccaccgacaaggacattgtgggc ggagcaagttttatttgtgggtacaatgtgatctccaaacatcacaacattccttttgaggtaaatctggtcaaccacac gactggggcagccacggtaacacttaaaaagggaggcaaattgaattttgagaaaagacgccgttacaagttcccggtag tggcttacgactgtggatctcctcacagggaatcaaatagggccatcattttcatcaaagtacaggacgtggatgagtac gcgccacattttaacaagacgagtgtaatggtagacatggaggagaacaagctatacaacccgttaattaagctaacggc cacggatgatgaccgttctaaactgttcagggatatatgtgattaccagatagtcacacccaatgtaccgttcaccattg acaaacagggtaatttgaaaaatacagtggaaatagagtacgctacacgacacaacttcatcctggaagtcatagcaaag gattgtgggggaaagaaatccaaacgtatatttgtcaacatcagaatcaaggaagcctgtaaaggtggatggacaggtat tcctgatcacgttgactataatgccggtacagggaagacgatcatagctccgagtgctgccctcaagtggtgtgatacgt catgtacgcccgattctgtgacagtaaagatgtccctgaagacaaagcacatagggaaaggctgtgatcgcgacacttac tccattacgtcacaacgcagactgtgtggtgccaatgacaagagtgtagacctgctccccccaccctccttaacgacaac atggactcgcacgttacccacagatgacggtaaggagagtgatcaggtgttctacttcgacggggaaagtaacgctgtag aggttccacatgaccgattcaatcacacgctccatcaacacttcacgctaatgacttggatgaaacataattttgcagag agtatgaagggagataaaaagaaaccaaaggaaacaattctgtgcatgtctgatggtgaaaaaatgagccgtcaccatta ttctttgttcatccacggagagaagttgattttgttgttacgtcgtgaggccgcagacgctgacgacatggaagtattta aaccggcagaatggagatggcacattccacagattaacgatcaggacagctggcatcactacgctatcagtgtagacttt cctcaggcagacccccctctggacctacacaaagagaggctccacctacccacacccatcatgaaccagtttaagatgca gatcgagggcagtcttaccaacgagggactcgtcatctcaaatgtggacaaagtagagaattatgtactcgccttacgtg gactgaggtattataacgacattccacaaaccatggtcagcagaacgttttctctgagctgttcatcacagagtggtcgt tttatcagtaatgaattcaatgtagaggttctagccatgcacaaggagccagagactgtccaacatgcgtacgcacaggt agcggccaaatctaacgtccacttaatggatccagtcagtggaacggggaatatggcagtaggagtggccagtgcttctc caaatgtgggtatggtggccatcattgtggtatgtgtgggattcctgttgtttatgatcattcttggcatcattcgtatc cgtgccgcacaccgtcgcacccagctcgtacaagtggatactgagggactggaatgggacaactcggcactcaccatcac agaaaatcccatggagcaaatgggacttcaggtatttgactatgaggagaacgccaccacagcattaaaggatgacagcg atacagacgatgactgtagtagctgtagagaagacgatattgacagctcggacgacgaaacgacccaagttaaaaaaatt aaagatctcgaatgggacgattcgtcattttaa |
|
Protein
| Protein ID | pfu_aug2.0_385.1_17361.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_385.1_17361.t1 MRSDHSGTHAYDYKIRKDPQHDGVTVITAEHTQPNAYDPVIDSKYKNGRGIPVFHGNISEQGKEVVLDPPLTATDKDIVG GASFICGYNVISKHHNIPFEVNLVNHTTGAATVTLKKGGKLNFEKRRRYKFPVVAYDCGSPHRESNRAIIFIKVQDVDEY APHFNKTSVMVDMEENKLYNPLIKLTATDDDRSKLFRDICDYQIVTPNVPFTIDKQGNLKNTVEIEYATRHNFILEVIAK DCGGKKSKRIFVNIRIKEACKGGWTGIPDHVDYNAGTGKTIIAPSAALKWCDTSCTPDSVTVKMSLKTKHIGKGCDRDTY SITSQRRLCGANDKSVDLLPPPSLTTTWTRTLPTDDGKESDQVFYFDGESNAVEVPHDRFNHTLHQHFTLMTWMKHNFAE SMKGDKKKPKETILCMSDGEKMSRHHYSLFIHGEKLILLLRREAADADDMEVFKPAEWRWHIPQINDQDSWHHYAISVDF PQADPPLDLHKERLHLPTPIMNQFKMQIEGSLTNEGLVISNVDKVENYVLALRGLRYYNDIPQTMVSRTFSLSCSSQSGR FISNEFNVEVLAMHKEPETVQHAYAQVAAKSNVHLMDPVSGTGNMAVGVASASPNVGMVAIIVVCVGFLLFMIILGIIRI RAAHRRTQLVQVDTEGLEWDNSALTITENPMEQMGLQVFDYEENATTALKDDSDTDDDCSSCREDDIDSSDDETTQVKKI KDLEWDDSSF |
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