Gene
| Gene Model ID | pfu_aug2.0_3710.1_02475 |
|---|---|
| Locus | scaffold3710.1 : 22067 ... 42815 : - |
| To GenomeBrowser | scaffold3710.1:22067..42815 |
| Genes list of scaffold | scaffold3710.1 |
| Synonym | pfu_aug1.0_25563.1_47739 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3710.1_02475.t1 | 2 | 1 | 7tm_1 | 119 | 372 | 4.8e-39 | 134.0 | 8.39938e-42 | 4.8e-39 | 134.0 |
| pfu_aug2.0_3710.1_02475.t1 | 2 | 2 | 7tm_1 | 391 | 422 | 4.8e-39 | 134.0 | 3.1 | 1800.0 | -2.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3710.1_02475.t1 | gi|260832289|ref|XP_002611090.1| | hypothetical protein BRAFLDRAFT_206170 [Branchiostoma floridae] | 6.00036e-42 |
| pfu_aug2.0_3710.1_02475.t1 | gi|632935125|ref|XP_007887943.1| | PREDICTED: pinopsin-like [Callorhinchus milii] | 1.99993e-41 |
| pfu_aug2.0_3710.1_02475.t1 | gi|512915412|ref|XP_004928383.1| | 4.00001e-41 | |
| pfu_aug2.0_3710.1_02475.t1 | gi|224458334|ref|NP_001138950.1| | c-opsin [Tribolium castaneum] | 2.0e-40 |
| pfu_aug2.0_3710.1_02475.t1 | gi|390332834|ref|XP_783302.2| | PREDICTED: pinopsin [Strongylocentrotus purpuratus] | 3.0e-40 |
Transcript
| Transcript ID | pfu_aug2.0_3710.1_02475.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3710.1_02475.t1 atggggactctaaaggaacaagttcaggaggctctaaaggaacaaatacaggagattctaaaggaacaagtacaggaggt tctaaaggaaaaagtacaggaggctctaaaggaacaagtacaggagaccctgaaggaacaagtacaggagactctaacgg aacaagtacaggagaccctgaaggaacaagtacaggagactctaacggaacaagtacagaaaactaatatatcgatgaat tcttcatttaacagcagcgacaacacaacagacatatccattacattaacagacaatgcctactactacattgcagcgta cctaattttcttgtcgatcgccgggacatttctgaacggagcagttatatttgcattcattcgattcaaaaccgtccaga caaacgcaaaccgctttgttgtcgccatctgtatctgtggcctatttatatccactttaggcataccatttgctgcagca tccgccatttctcacacgtggctgtttggaagttttggctgtaagctccatggatttgttttaaccggtctgggcatcag catgattgctatttttacagcaattgcattcgacagatacattgccgttgtcaaattttcggccaactggaaactgaaaa ctcacgaggtcacagcactaatcgctctgtgttttacatacggaggagtcctggcactttttcctcttttggactggagc tcatacacggaggaaattgctcacatatcatgctcaatcgactggaacgaaagaagcctgtccagtattacatacagcat taccctgatgattggcggcctccttgcacccctgattgttattgtcaccctttacatgcaagttatttccttgttgcata tccaaagtgtacaagcaagctacagtctcagatcgaatctcagaagagttgtaagacgggaaagacaggtgaccatgacc atcatcataatgatagttgcgtttgttatcacttggctgccatatgccatattttctatggttgccatcgctggatatga gtcactattttcaccgctagcgcaaactataccatccatgtttgcgaagtcatctgtcctttggagcccaatcattttcg cgatgcgaaatagcgcaatgaaaaatgcaatattcagcgcattttcatgtcttaagatatgttatcgaagacacttaaat cacaatgagaaatctgtttcaagtgcgaaaaaatctgagaaaacaacgaaaacgtcttcattctctgctgatgaaactgt tgccatgacaactggactgtga |
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Protein
| Protein ID | pfu_aug2.0_3710.1_02475.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3710.1_02475.t1 MGTLKEQVQEALKEQIQEILKEQVQEVLKEKVQEALKEQVQETLKEQVQETLTEQVQETLKEQVQETLTEQVQKTNISMN SSFNSSDNTTDISITLTDNAYYYIAAYLIFLSIAGTFLNGAVIFAFIRFKTVQTNANRFVVAICICGLFISTLGIPFAAA SAISHTWLFGSFGCKLHGFVLTGLGISMIAIFTAIAFDRYIAVVKFSANWKLKTHEVTALIALCFTYGGVLALFPLLDWS SYTEEIAHISCSIDWNERSLSSITYSITLMIGGLLAPLIVIVTLYMQVISLLHIQSVQASYSLRSNLRRVVRRERQVTMT IIIMIVAFVITWLPYAIFSMVAIAGYESLFSPLAQTIPSMFAKSSVLWSPIIFAMRNSAMKNAIFSAFSCLKICYRRHLN HNEKSVSSAKKSEKTTKTSSFSADETVAMTTGL |
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