Gene
| Gene Model ID | pfu_aug2.0_3349.1_32455 |
|---|---|
| Locus | scaffold3349.1 : 51650 ... 60035 : - |
| To GenomeBrowser | scaffold3349.1:51650..60035 |
| Genes list of scaffold | scaffold3349.1 |
| Synonym | pfu_aug1.0_257224.1_21588 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3349.1_32455.t1 | 2 | 1 | EF-hand_7 | 24 | 39 | 4.2e-16 | 58.8 | 0.26 | 440.0 | 1.1 |
| pfu_aug2.0_3349.1_32455.t1 | 3 | 1 | EF-hand_6 | 26 | 38 | 8.4e-14 | 50.1 | 0.77 | 1300.0 | -0.2 |
| pfu_aug2.0_3349.1_32455.t1 | 2 | 1 | EF-hand_8 | 27 | 68 | 1.1e-18 | 66.5 | 4.2e-06 | 0.007 | 15.9 |
| pfu_aug2.0_3349.1_32455.t1 | 3 | 1 | EF-hand_1 | 28 | 38 | 2.8e-16 | 57.5 | 2.2 | 3600.0 | -2.3 |
| pfu_aug2.0_3349.1_32455.t1 | 2 | 2 | EF-hand_7 | 51 | 113 | 4.2e-16 | 58.8 | 2.9e-18 | 4.8e-15 | 55.4 |
| pfu_aug2.0_3349.1_32455.t1 | 3 | 2 | EF-hand_1 | 52 | 78 | 2.8e-16 | 57.5 | 5.0e-11 | 8.2e-08 | 31.0 |
| pfu_aug2.0_3349.1_32455.t1 | 3 | 2 | EF-hand_6 | 52 | 77 | 8.4e-14 | 50.1 | 2.6e-10 | 4.3e-07 | 29.2 |
| pfu_aug2.0_3349.1_32455.t1 | 2 | 1 | EF-hand_5 | 52 | 75 | 8.8e-13 | 46.9 | 7.2e-09 | 1.2e-05 | 24.4 |
| pfu_aug2.0_3349.1_32455.t1 | 2 | 2 | EF-hand_8 | 64 | 116 | 1.1e-18 | 66.5 | 5.5e-19 | 9.0e-16 | 57.2 |
| pfu_aug2.0_3349.1_32455.t1 | 3 | 3 | EF-hand_1 | 88 | 114 | 2.8e-16 | 57.5 | 5.3e-11 | 8.7e-08 | 30.9 |
| pfu_aug2.0_3349.1_32455.t1 | 2 | 2 | EF-hand_5 | 90 | 109 | 8.8e-13 | 46.9 | 7.4e-09 | 1.2e-05 | 24.3 |
| pfu_aug2.0_3349.1_32455.t1 | 3 | 3 | EF-hand_6 | 91 | 114 | 8.4e-14 | 50.1 | 3.4e-07 | 0.00056 | 19.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3349.1_32455.t1 | gi|260796773|ref|XP_002593379.1| | hypothetical protein BRAFLDRAFT_57687 [Branchiostoma floridae] | 6.0e-16 |
| pfu_aug2.0_3349.1_32455.t1 | gi|612399588|ref|XP_007515313.1| | calmodulin [Bathycoccus prasinos] | 8.0e-16 |
| pfu_aug2.0_3349.1_32455.t1 | gi|565368025|ref|XP_006350654.1| | PREDICTED: calmodulin-like protein 11-like [Solanum tuberosum] | 2.0e-15 |
Transcript
| Transcript ID | pfu_aug2.0_3349.1_32455.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3349.1_32455.t1 atgagcaaggctgttaaacaacatcctaagaaacatcttatacctaaagaggtggatgtcttaacggaaaagcaaaagcg cggcgtcatagaatgggatggcttcctcaatataatcatagaaatattaagaagtagtgacaagaagtatcagttacgag aagcgtttatgaccttcgataaagacggaagtggttctatagacagaggggaacttaaagaaattatgttgaaaataatg cccggacagtatacggaagcggaagtcgatgccttattagataaagctgatttggatggtgatggagagatagactttga agaattttgtagcatgatggagggccaggaaaacgacggaaacgagagcgactaa |
|
Protein
| Protein ID | pfu_aug2.0_3349.1_32455.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3349.1_32455.t1 MSKAVKQHPKKHLIPKEVDVLTEKQKRGVIEWDGFLNIIIEILRSSDKKYQLREAFMTFDKDGSGSIDRGELKEIMLKIM PGQYTEAEVDALLDKADLDGDGEIDFEEFCSMMEGQENDGNESD |
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