Gene
| Gene Model ID | pfu_aug2.0_3240.1_02365 |
|---|---|
| Locus | scaffold3240.1 : 51737 ... 54885 : - |
| To GenomeBrowser | scaffold3240.1:51737..54885 |
| Genes list of scaffold | scaffold3240.1 |
| Synonym | pfu_aug1.0_5913.1_59886 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3240.1_02365.t1 | 1 | 1 | zf-B_box | 15 | 51 | 2.3e-08 | 33.7 | 5.6e-12 | 4.2e-08 | 32.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3240.1_02365.t1 | gi|330801458|ref|XP_003288744.1| | hypothetical protein DICPUDRAFT_153011 [Dictyostelium purpureum] | 1.0e-06 |
| pfu_aug2.0_3240.1_02365.t1 | gi|260836373|ref|XP_002613180.1| | hypothetical protein BRAFLDRAFT_73101 [Branchiostoma floridae] | 9.0e-06 |
| pfu_aug2.0_3240.1_02365.t1 | gi|300796713|ref|NP_001178730.1| | E3 ubiquitin-protein ligase TRIM71 [Rattus norvegicus] | 1.0e-05 |
| pfu_aug2.0_3240.1_02365.t1 | gi|109948300|ref|NP_001035968.1| | E3 ubiquitin-protein ligase TRIM71 [Mus musculus] | 1.0e-05 |
Transcript
| Transcript ID | pfu_aug2.0_3240.1_02365.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3240.1_02365.t1 atgtcgacctggtcaaagaatgaccttgacgtagcagattataaatgtggtttccatagcggggagaaagttcaaggtta ttgtaaatcatgtgacgtaccagtgtgtatacagtgtatactcagtaaatgtaatggccataccttcaacaatatcaact ctgccatgagagataaacaggatgttgtcctgagacaagtcattcagttagaggaaggcaaactaccactactagagaat aaactggcccaacttgaccagtcagctaaaaataatgatgaagaggctgataaaaatgtagacagaattatacatagagc aaaggccttgaaacacaagatagacatggctgtagccaagctgtcagaggggatagaggtcagcagaaaacgtaaccaaa ccaagctgactgccgctaagtaccctctacagacatgttaccgtgacatgacatcgctgacccgcgactacaaggaggca ttacggggtaaaccagacctgggagtgatggcaatggagagggagatacatcgtgcgatacagatggtggaggacaaggc ggtcattcctgtacctaaacttacactaccatacctagagtgggaggagagtgcagaagtactcaacgttatagagagga tgatgggaagactggtgtatgatgacgacgctgactga |
|
Protein
| Protein ID | pfu_aug2.0_3240.1_02365.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3240.1_02365.t1 MSTWSKNDLDVADYKCGFHSGEKVQGYCKSCDVPVCIQCILSKCNGHTFNNINSAMRDKQDVVLRQVIQLEEGKLPLLEN KLAQLDQSAKNNDEEADKNVDRIIHRAKALKHKIDMAVAKLSEGIEVSRKRNQTKLTAAKYPLQTCYRDMTSLTRDYKEA LRGKPDLGVMAMEREIHRAIQMVEDKAVIPVPKLTLPYLEWEESAEVLNVIERMMGRLVYDDDAD |
|