Gene
| Gene Model ID | pfu_aug2.0_324.1_13994 |
|---|---|
| Locus | scaffold324.1 : 148644 ... 162295 : - |
| To GenomeBrowser | scaffold324.1:148644..162295 |
| Genes list of scaffold | scaffold324.1 |
| Synonym | pfu_aug1.0_14294.1_25290 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| probable atp-dependent rna helicase ddx31 isoform x2 | GO:0097159 GO:1901363 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_324.1_13994.t1 | 1 | 1 | DEAD | 2 | 167 | 8.4e-37 | 126.2 | 3.0e-38 | 7.3e-35 | 119.9 |
| pfu_aug2.0_324.1_13994.t1 | 1 | 1 | Helicase_C | 286 | 354 | 4.6e-19 | 68.0 | 5.8e-22 | 1.4e-18 | 66.4 |
| pfu_aug2.0_324.1_13994.t1 | 1 | 1 | DUF4217 | 453 | 493 | 4.0e-08 | 32.6 | 3.4e-11 | 8.5e-08 | 31.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_324.1_13994.t1 | gi|676462948|ref|XP_009056436.1| | hypothetical protein LOTGIDRAFT_120211 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_324.1_13994.t1 | gi|675872734|ref|XP_009021927.1| | hypothetical protein HELRODRAFT_83714 [Helobdella robusta] | 0.0 |
| pfu_aug2.0_324.1_13994.t1 | gi|557294884|ref|XP_006029868.1| | PREDICTED: probable ATP-dependent RNA helicase DDX31 isoform X2 [Alligator sinensis] | 0.0 |
| pfu_aug2.0_324.1_13994.t1 | gi|700421776|ref|XP_009949154.1| | PREDICTED: probable ATP-dependent RNA helicase DDX31, partial [Leptosomus discolor] | 0.0 |
| pfu_aug2.0_324.1_13994.t1 | gi|564231300|ref|XP_006260048.1| | PREDICTED: probable ATP-dependent RNA helicase DDX31 isoform X2 [Alligator mississippiensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_324.1_13994.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_324.1_13994.t1 atgactacagtccaacagttagcaattcctagaataatggagggtaaagacgtcctcgttaagtcacagacaggggcagg aaagacgttatgttatgctgtacccattgtacaagacttgcaaggcagaaatccaagagttcagaggaatgatggtgtac acgctatcattatagtgccatctagagaacccttccagtggattgtgccaggttatttgatcggaggagagaaaaccaaa gctcagaaagctcgattacgtaaaggcatgaatatcttggtggccacaccgggtcgtctgatggaccatatagaacatac agcttccttgtctctcgctaatgtacagtggctggtactggacgaggcagatagaatgcttgacatgggatatgaaaaag aagtggccaaaatcctgacaaaactcaacaatgcaaagacttcaggcagcatacaaactattctggtctctgcaactctt acagaaggagtagaaagattagcaggtatctccctaacagacccagttatagttgatgctgtgacgaacggacacgcatg tacagaatcaattaaacttgcagaaggaatcaattcagaaaaccttaaaaactttgttcttcctgaaaaactcaaacaac attttgtgattacaccctgtaaactgaggcttgtgaccctcgcagcttttgttttaggaaaatgtaagttcagcagtcac ccagggaagatgatagtgttcctatccacccaggtggcagtagactttcattaccagatcttcagtcatttctttggtgg aggaagccagggactactggaggaggagggtggtgatggtgatgatagtgtcattttctttaagttacatggagatatgg aacaaacagagagaacgaatgtgttccatagtttctgttctgcatcctcgggtgtattattttgcactgatgtagcatcc cgaggccttcacttaccccatgtccagtggattgtccagtacaccacgccaggtgtggccacagagtacatacacagggt gggacgcacagcaagggccggcaagaaagggaactcactcttgtttgtcttaccttcagaggttgagtacataaagacat tacaggattacggtatcagtatgacagagctgcagatgacagatatactccagacgttagtgggcaataggctgtgggtt tctgacgatgtggtgactgtgagagatgtagtgtccactacagaaactaaggtaggatatactccagatgtagtggtggc tgtgagagatgtagtgtccactacagacactaagagacaactcccaagaacgtatgaggagtcagctacttaccttcaga tgtgctttgagaaccatatagtggaacattccaaaatgcatcaattagcaacaaaagcctaccagtctttcatcagagct tatgccacatatccctccagtctgaaatccatatttcatggatataactctaaaggtgctgtgcataagttccagcgacc agatgatagaaacagggacaaaagaaagccacatccttcattttcttcattgagtgtatctgaattttcaagtggacttg ttaaagggaaagtgacaaagcatgcaaaacatacgaagaagaagaaaaaattgtaa |
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Protein
| Protein ID | pfu_aug2.0_324.1_13994.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_324.1_13994.t1 MTTVQQLAIPRIMEGKDVLVKSQTGAGKTLCYAVPIVQDLQGRNPRVQRNDGVHAIIIVPSREPFQWIVPGYLIGGEKTK AQKARLRKGMNILVATPGRLMDHIEHTASLSLANVQWLVLDEADRMLDMGYEKEVAKILTKLNNAKTSGSIQTILVSATL TEGVERLAGISLTDPVIVDAVTNGHACTESIKLAEGINSENLKNFVLPEKLKQHFVITPCKLRLVTLAAFVLGKCKFSSH PGKMIVFLSTQVAVDFHYQIFSHFFGGGSQGLLEEEGGDGDDSVIFFKLHGDMEQTERTNVFHSFCSASSGVLFCTDVAS RGLHLPHVQWIVQYTTPGVATEYIHRVGRTARAGKKGNSLLFVLPSEVEYIKTLQDYGISMTELQMTDILQTLVGNRLWV SDDVVTVRDVVSTTETKVGYTPDVVVAVRDVVSTTDTKRQLPRTYEESATYLQMCFENHIVEHSKMHQLATKAYQSFIRA YATYPSSLKSIFHGYNSKGAVHKFQRPDDRNRDKRKPHPSFSSLSVSEFSSGLVKGKVTKHAKHTKKKKKL |
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